PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00002330-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 306aa MW: 34557.7 Da PI: 7.3268

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00002330-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.4e-33	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ WALNUT_00002330-RA 19 PRLRWTPELHHCFVHAIERLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.612	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-31	15	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.68E-15	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-9	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MSSCGRNGAV RQYIRSKVPR LRWTPELHHC FVHAIERLGG HHKATPKLVL QLMDVKGLTI 60 SHVKSHLQMY RSMRGDLGRQ DRDSTQQRKH EFFEEHDDGC VDEVNDMGFH PSSKPIEKES 120 DSDFSNSTPL PPKRARIETL SSISESLQCS QRISETVPNP YCFDDYLRAM TEHRGIKEGY 180 AGSRWQTQPQ STAFYLPQDL YNRSSFKYAV EKESDFLEVP GLERTKERMP KGENEKRGNV 240 VEVGGCELSL SLSLPPPSSQ RSNASSMSEI SEAISPYPWS NYKDCSSSSS GKHSINLDLS 300 IALCGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018828798.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_018828807.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_018828815.1	0.0	PREDICTED: myb family transcription factor PHL6-like
TrEMBL	A0A2I4FAY6	0.0	A0A2I4FAY6_JUGRE; myb family transcription factor PHL6-like
STRING	VIT_01s0137g00050.t01	1e-136	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	7e-33	G2-like family protein