PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002316-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23825.4 Da    PI: 9.8265
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002316-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF947.1e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gk++ ys+
  WALNUT_00002316-RA  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKVFQYST 59
                        79***********************************************96 PP
2K-box912.2e-3084165990
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          + +++ s++ e+akLk+++e Lqr+q+hl+GedL+sLslkeLq+LeqqL+++lk+iRs+Kn++++e+i+ lqkk ke ++e
  WALNUT_00002316-RA  84 HDLEQNGSWTLEHAKLKARMEILQRNQKHLMGEDLDSLSLKELQNLEQQLDSALKHIRSRKNQVMHESISALQKKVKEKEKE 165
                         55677899*******************************************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.043161IPR002100Transcription factor, MADS-box
CDDcd002659.61E-41275No hitNo description
SuperFamilySSF554557.33E-33279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-31323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.8E-2488165IPR002487Transcription factor, K-box
PROSITE profilePS5129715.889179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKVFQYSTD  60
SCMERILERY ERYSYHAERQ LIAHDLEQNG SWTLEHAKLK ARMEILQRNQ KHLMGEDLDS  120
LSLKELQNLE QQLDSALKHI RSRKNQVMHE SISALQKKVK EKEKELLAEQ AQWDQQNQSL  180
HTSSILPQPL LPLDNIGTLV SLSLAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-23174173Myocyte-specific enhancer factor 2B
1tqe_Q8e-23174173Myocyte-specific enhancer factor 2B
1tqe_R8e-23174173Myocyte-specific enhancer factor 2B
1tqe_S8e-23174173Myocyte-specific enhancer factor 2B
6c9l_A8e-23174173Myocyte-specific enhancer factor 2B
6c9l_B8e-23174173Myocyte-specific enhancer factor 2B
6c9l_C8e-23174173Myocyte-specific enhancer factor 2B
6c9l_D8e-23174173Myocyte-specific enhancer factor 2B
6c9l_E8e-23174173Myocyte-specific enhancer factor 2B
6c9l_F8e-23174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9183090.0KF918309.1 Carya cathayensis AP1 (AP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828587.11e-134PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ424291e-101AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
SwissprotQ6E6S71e-101AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2I4FAB21e-133A0A2I4FAB2_JUGRE; truncated transcription factor CAULIFLOWER A-like
STRINGEOY221351e-107(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-86AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  4. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]