PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001299-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 347aa MW: 38498.8 Da PI: 6.3752 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.1e-09 | 260 | 303 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq WALNUT_00001299-RA 260 IAAKNRRERISERLKVLQELVPNG-----SKVDLVTMLEKAISYVKFLQ 303 5679*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-12 | 250 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.24E-14 | 251 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.339 | 253 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.65E-11 | 259 | 307 | No hit | No description |
SMART | SM00353 | 8.5E-12 | 259 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.6E-7 | 261 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MALAKDQMPH DSCMGYVQVP GFSSPGPYAV DHDHGHSKAV LQEEDFLENG VVIKDIGMGH 60 SSSVLFGPCS SVNSNASFVF TATSNYQPEE AADHSLIDFK GGYGNFMHAC ESLLSFEQSE 120 RASLNSNFLK TNNHKDEYSM WEQANFSQNY QRNQISTTTP KCGTDPRLLE ELSCFQTASN 180 DSSITNTSAK EREHGEDGTY GWLYSEATVV TDSIQESTHE TSFHKRVHMG ERTQALKKQC 240 TNANKKPKPK SSSPKDPQSI AAKNRRERIS ERLKVLQELV PNGSKVDLVT MLEKAISYVK 300 FLQLQVKVLA TDEFWPAQGG KAPDISQVKE AIDAILSSQR DRNSSSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018816619.1 | 0.0 | PREDICTED: putative transcription factor bHLH086 | ||||
TrEMBL | A0A2I4EB43 | 0.0 | A0A2I4EB43_JUGRE; putative transcription factor bHLH086 | ||||
STRING | VIT_14s0006g01470.t01 | 1e-121 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4937 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 5e-61 | ROOT HAIR DEFECTIVE6 |