PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001175-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 196aa MW: 22072.6 Da PI: 6.1508 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 12 | 54 | 1 | 43 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +g+WT+ Ed+ll d+v+++G+g+W+++a++ g++R +k+c++r WALNUT_00001175-RA 12 KGPWTPSEDKLLCDYVNLYGKGRWSSVAKCTGLNRNGKSCRLR 54 79***************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-15 | 6 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.04 | 7 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-12 | 8 | 54 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-9 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 12 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-10 | 14 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGSGIQEQGW TKGPWTPSED KLLCDYVNLY GKGRWSSVAK CTGLNRNGKS CRLRSPEKKE 60 KGTKAIIPKQ KQPPQTQEQL PQENDMIKRA ISCGNRTPSD HHEQITTESQ GGKEMFFMHH 120 PTNLEDQCLP VTCQDVASWL DTIREEDLCG GPKNLDNHPK GVMDDHHDQA TAAGFSCGRV 180 NSIDYFYNED YIFLEG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018816609.1 | 1e-121 | PREDICTED: uncharacterized protein LOC108987984 | ||||
TrEMBL | A0A2I4EB30 | 1e-120 | A0A2I4EB30_JUGRE; uncharacterized protein LOC108987984 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-19 | myb domain protein 305 |