PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00000882-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 182aa MW: 20683.9 Da PI: 10.1275

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00000882-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.8	3.3e-07	14	67	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC......TTS-.STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas...kapskK.lsKaeiLekAveYIksL 54 + + +Er+RR +++ ++L +l+P + k p++ +s + L A++YI +L WALNUT_00000882-RA 14 NRKTVERNRRIHMKGLCFKLASLIPDDLhyiK-PARNmVSQQDKLDYATRYITQL 67 56789*******************555954.55555************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-9	13	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-10	13	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MKKTGSNHDA TKPNRKTVER NRRIHMKGLC FKLASLIPDD LHYIKPARNM VSQQDKLDYA 60 TRYITQLRER IEKLKRKKEQ VAVSLGTGSC NMIDDTGNGS WLPVVDLRDL GSSIEVILIS 120 GLQKNFMYEV TCILQEEGAE VVSGSFSTVG EKIFHTVHAK PKISRIGVET SRVWQRLQEL 180 KN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018831547.1	1e-134	PREDICTED: uncharacterized protein LOC108999193
TrEMBL	A0A2I4FIT6	1e-133	A0A2I4FIT6_JUGRE; uncharacterized protein LOC108999193
STRING	XP_002511418.1	4e-73	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6849	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	7e-17	bHLH family protein