PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000806-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 329aa    MW: 36823.4 Da    PI: 10.0021
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000806-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-19185218134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  WALNUT_00000806-RA 185 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 218
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.664179215IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-12179219No hitNo description
SMARTSM004013.9E-18179230IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-15183218IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.60E-11184212No hitNo description
PfamPF003205.3E-17185218IPR000679Zinc finger, GATA-type
PROSITE patternPS003440185210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTPPYHRTPP SPNFPLDLNE DHQHDHHLFL AKPQASSSSS SFSSRISFNH ADQDQRGSYY  60
YRESKHFQND QEVDKFVSQG DGSCDPLTLK DESANNGLKV TILNKEINKI EDQSETSSAK  120
WMPSKMRMMR KMITSERTGL DTPLNPMQKY FEDQKQPKPP NNSENDNMSR NNSLNSSSNT  180
AIRVCADCNT TKTPLWRSGP RGPKSLCNAC GIRQRKARRA IAAAANGTIL VEKPPSMKSA  240
ASAKVQHKDK RSSNCYVPKF KKKCKLSTTA TTTTSTTTTP SHHHGRKKLC LEDFTISLSK  300
NSAFQRVFPQ DEKEAAILLM ALSYGLVHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845760.10.0PREDICTED: GATA transcription factor 21 isoform X1
TrEMBLA0A2I4GPD60.0A0A2I4GPD6_JUGRE; GATA transcription factor 21 isoform X1
STRINGXP_010090039.12e-81(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-32cytokinin-responsive gata factor 1