PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00000736-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 40789.8 Da PI: 5.6836 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++l+++++ G g W+ ++ g++R++k+c++rw++yl WALNUT_00000736-RA 14 KGAWTSQEDDILIEYIRINGEGKWRNLPKNAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ WALNUT_00000736-RA 67 RGNMGPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 79999*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.664 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.14E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.89E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.258 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.23E-12 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MGRSPCCAKE GLNKGAWTSQ EDDILIEYIR INGEGKWRNL PKNAGLKRCG KSCRLRWLNY 60 LRPDIKRGNM GPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVQNQQ 120 ISTAVSIPPK LSGHSDENNF PPPAVSTTPM LSGYTDENNF NPVPTINLMS SIDTSTLPSS 180 PISKTCTNSN VIRTKAFRCS SKLLPTPQPN KSSCKENLET NVIGVGLMPM DGQHHSINKT 240 TELSGTFDEL LSLVTTTPTT TGSSGDHNNN QSSDLVMNFN LGDICLSDLL NSDFSGVCDF 300 NCSDDNMSND LSPVSADQPP LMQYSDHRDM LQDWKISNSC VQTMNYVAPN LQYSFSSLLN 360 SGAEWFEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018844477.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A2I4GKP9 | 0.0 | A0A2I4GKP9_JUGRE; myb-related protein 308-like | ||||
STRING | GLYMA13G16890.1 | 9e-96 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 9e-62 | myb domain protein 3 |