PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000459-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 325aa    MW: 36373.4 Da    PI: 9.411
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000459-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35e-31257314359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y WrKYGqK++kgs++prsYY+C+s  gCp++k+ver+ ed +++++tYegeHnh+
  WALNUT_00000459-RA 257 DDYPWRKYGQKPIKGSPHPRSYYKCSSVrGCPARKHVERCVEDSTMLVVTYEGEHNHS 314
                         99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.4E-17217253IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.0E-33243314IPR003657WRKY domain
PROSITE profilePS5081129.907250316IPR003657WRKY domain
SuperFamilySSF1182908.24E-27253315IPR003657WRKY domain
SMARTSM007742.4E-36255315IPR003657WRKY domain
PfamPF031064.2E-26257313IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEKASGVCVS ETPRSDFKIH EVAQNSFRYA YQLLSSISGQ NLKKRSIEEI SPIAEAAENE  60
FRKLLTLLEG SMSSHFRSIR KGPLPNYRGI NPVELMDSPN SMPQDFSCNS TPVPCMVREL  120
FPLHSDKSVS ALIQSDNIKL YKQNKALQQC YPENSFAATK PIMGLNELSK QPVPSLISMD  180
GSMDKQTIYY SSSEVLASRN EASLLSSMGK FGVQSEASTR SVASTDGCHC SKRRKLRIKR  240
TIRVPALSNK LADIPPDDYP WRKYGQKPIK GSPHPRSYYK CSSVRGCPAR KHVERCVEDS  300
TMLVVTYEGE HNHSRNAYHS NPIST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22243313271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847065.10.0PREDICTED: probable WRKY transcription factor 15
TrEMBLA0A2I4GT420.0A0A2I4GT42_JUGRE; probable WRKY transcription factor 15
STRINGcassava4.1_032017m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-46WRKY DNA-binding protein 74