PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00000224-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 199aa MW: 22936.8 Da PI: 4.8047 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.5 | 5.5e-32 | 8 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeelv ++L +k++ +++ ++i+++d++ ++Pwd+ k+ ++ + yfFsk +nr tk+gyW d+ WALNUT_00000224-RA 8 LPPGFRFCPTDEELVLHFLYHKASLLPFHP-NIIPDLDLCLHDPWDFInGKTLSSGSTFYFFSKVT--------ENRFTKKGYWMDLDIDE 89 79*************************999.89**************7445556677889998864........5899************* PP NAM 91 evlskkgelvglkktLvfykgrap.kgektdWvmheyrl 128 +vl++ g++vg+kk Lvfy g+ap +g +t W+m+ey+l WALNUT_00000224-RA 90 PVLTSAGKKVGIKKHLVFYIGQAPgQGYETAWIMQEYHL 128 *******************997764799*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-38 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.673 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-20 | 9 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MGDDSVNLPP GFRFCPTDEE LVLHFLYHKA SLLPFHPNII PDLDLCLHDP WDFINGKTLS 60 SGSTFYFFSK VTENRFTKKG YWMDLDIDEP VLTSAGKKVG IKKHLVFYIG QAPGQGYETA 120 WIMQEYHLCN YGVSGAFYNR RVKRKDRTKW VLCRVHERTG NFAECFCCSD DEDNGTELSS 180 LDEMYLSTID DDLDEINFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-29 | 5 | 161 | 17 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-29 | 5 | 161 | 17 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-29 | 5 | 161 | 17 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-29 | 5 | 161 | 17 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-29 | 5 | 161 | 17 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-29 | 5 | 161 | 17 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-29 | 5 | 161 | 17 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-29 | 5 | 161 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018827519.1 | 1e-149 | PREDICTED: NAC domain-containing protein 104-like isoform X1 | ||||
Swissprot | Q8GWK6 | 2e-56 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A2I4F799 | 1e-148 | A0A2I4F799_JUGRE; NAC domain-containing protein 104-like isoform X1 | ||||
STRING | VIT_04s0044g01500.t01 | 1e-76 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 7e-59 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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