PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000035-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 542aa    MW: 58559.9 Da    PI: 8.8823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000035-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-052850123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  WALNUT_00000035-RA 28 FICEVCNKGFQREQNLQLHRRGH 50
                        89*******************88 PP
2zf-C2H213.30.00026104126123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  WALNUT_00000035-RA 104 WKCEKCSKRYAVQSDWKAHSKTC 126
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-72750No hitNo description
Gene3DG3DSA:3.30.160.606.0E-62750IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.992850IPR007087Zinc finger, C2H2
SMARTSM003550.00522850IPR015880Zinc finger, C2H2-like
PfamPF121712.6E-52850IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SMARTSM003551306999IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-592125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.88E-799124No hitNo description
SMARTSM00355130104124IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MRHFFSMTDP DAEVVALSPK TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS  60
KKEPKRKVYL CPEPTCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCEKCS KRYAVQSDWK  120
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAQESA RHPTSLNTMG SHHLFGNNHM  180
NLGLSQVGSQ NPPLHNPNHP SSNMLRLGSS GGAAKFEHLI PPSSPFGQSR QPMPPSSALF  240
NMPDANQSFP NKHLHGLMQQ LPDLQSSSNN SPQATNLFNL GFFSNSSSSM GGINGDHANL  300
SSSGLLMQDQ LNNSNGSGGG HGTALFSSGN MGHNGGSCVS SLYGSSMHPE NIDSHMSATA  360
LLQKAAQIGS TSSSNNSSLL RSLVSSSSST PTYDKQNALA SFGINFGSGH GGTDHQNLRS  420
HMENESHLQG LMNSLANAGS SIFVGGHGQD NNFGGFNGSH RNTSFSGVDE AKLHQNLAHV  480
SFGGSDKLTL DFLGVGGMVR NLGGGYSQTD QQQQHAMNMS SLEPGLSTDQ GSHEPFGSTT  540
LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34100161364Zinc finger protein JACKDAW
5b3h_F1e-34100161364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-122AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841142.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
SwissprotQ8GYC11e-126IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A2I4GB620.0A0A2I4GB62_JUGRE; protein indeterminate-domain 4, chloroplastic-like
STRINGEOY011980.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-112indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]