PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00000026-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 284aa MW: 31078.8 Da PI: 6.9044

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00000026-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.1	4.5e-34	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl WALNUT_00000026-RA 18 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-32	17	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.63E-18	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-25	18	73	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-8	112	136	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDPITGGNSH NNASLASKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL RVMGVQGLTI 60 YHVKSHLQKY RLAKYLPDSS SDGRLTDFFC SMFIYYINDG NYVLIDQCIG QVQRQLQLRI 120 EAQGKYLKKI IEEQQRLGGV VSETSGSGVP GPASGDNCPD SDNKTDPATP APTSEGPLQD 180 KAAKERAPAS LSIDESFSSH HEPLTPDSGC HLSSPAESPK GERLIKKQRV LVGGAYAKPE 240 MVLPHQILES SCTSYQQQHS IYLSEPSSGI SIRNEDHMEK LGAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018841015.1	0.0	PREDICTED: myb family transcription factor PHL7-like isoform X1
Refseq	XP_018841023.1	0.0	PREDICTED: myb family transcription factor PHL7-like isoform X1
Refseq	XP_018841032.1	0.0	PREDICTED: myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0	9e-99	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2I4GAT3	0.0	A0A2I4GAT3_JUGRE; myb family transcription factor PHL7-like isoform X1
STRING	VIT_00s0475g00040.t01	1e-140	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-97	G2-like family protein