PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4U30818.10 | ||||||||
Common Name | JCGZ_12803, LOC105637317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ZF-HD | ||||||||
Protein Properties | Length: 253aa MW: 27442.6 Da PI: 8.506 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.3 | 2.9e-31 | 124 | 179 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eClkNhAas Gg +vDGCgEfmp+ geegta+al+CaAC+CHRnFHR+e + e Jcr4U30818.10 124 VRYRECLKNHAASKGGFVVDGCGEFMPT-GEEGTAEALRCAACQCHRNFHRKEIDGE 179 89*************************8.999********************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-21 | 124 | 177 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.8E-29 | 124 | 176 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.0E-29 | 125 | 176 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.364 | 126 | 175 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEVRGQEKGI AMPSSLGCNP TNRDSSSKVP SSNILSAFGE TKEDDHHHHH QNLERYPLFH 60 HHQMNLQNLP LKPTGGPEQT QDPTPAPAMI TAVSANNRVA SVPSRSSSRS PPAPPGPPTS 120 TGLVRYRECL KNHAASKGGF VVDGCGEFMP TGEEGTAEAL RCAACQCHRN FHRKEIDGEH 180 QSAATNSYYK DNNQRNTIPQ QQLATSHPPI SQPSVHYHHR YPHGLTLGAP TTTPAPTIVM 240 TFGGGGSCRR IIK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076140.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A067KRE0 | 0.0 | A0A067KRE0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_032899m | 1e-64 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 2e-29 | homeobox protein 33 |
Link Out ? help Back to Top | |
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Entrez Gene | 105637317 |
Publications ? help Back to Top | |||
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