PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4U29445.10
Common NameJCGZ_26234, LOC105648592
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 260aa    MW: 29866.4 Da    PI: 6.5769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4U29445.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+ +  +G  +W+++++  g++R++k+c++rw +yl
    Jcr4U29445.10 14 KGPWTAEEDKKLVNFIFTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.42.2e-1572111647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + E+ l ++++++lG++ W++Ia++++ gRt++++k++w+++
    Jcr4U29445.10  72 EAEENLVIELHALLGNR-WSKIASRLP-GRTDNEIKNHWNTH 111
                      67***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-22562IPR009057Homeodomain-like
PROSITE profilePS5129414.006961IPR017930Myb domain
SuperFamilySSF466893.43E-2711108IPR009057Homeodomain-like
SMARTSM007175.5E-141363IPR001005SANT/Myb domain
PfamPF002499.2E-161461IPR001005SANT/Myb domain
CDDcd001673.35E-101661No hitNo description
PROSITE profilePS5129426.85962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-2463117IPR009057Homeodomain-like
SMARTSM007178.3E-1566114IPR001005SANT/Myb domain
CDDcd001675.21E-1171111No hitNo description
PfamPF002494.9E-1472111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLVNFIF THGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NEAEENLVIE LHALLGNRWS KIASRLPGRT DNEIKNHWNT HIKKKLIKKG  120
IDPVTHKPLN KIQEPTSHNT TSNDQPNFSA AENHKQELLP NNKNSDHIHA SSSNSSGDNS  180
NTTTESSETN SFSDPLMDYI LSETFLEDHS NWNFPVTREN QCCELGLIPS PKDFEDDEYF  240
RLDCFNEMDY LNVLDMDDNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347330.0KM034733.1 Jatropha curcas clone JcMYB113 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090417.10.0protein ODORANT1
SwissprotQ50EX64e-87ODO1_PETHY; Protein ODORANT1
TrEMBLA0A067JHX70.0A0A067JHX7_JATCU; MYB family protein
STRINGPOPTR_0012s14540.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.11e-84myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]