PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U29398.10

Common Name

JCGZ_12524, LOC105639991

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 164aa MW: 17705.9 Da PI: 7.53

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U29398.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.3e-06	39	61	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF+++ L H +H Jcr4U29398.10 39 YKCKLCNKSFPNHQALAGHKASH 61 9******************9998 PP
2	zf-C2H2	13.2	0.00026	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+++F++ L H r+H Jcr4U29398.10 96 HECSICHRTFPSGQALGGHKRRH 118 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	9.0E-4	39	61	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	4.78E-9	39	61	No hit	No description
Pfam	PF13912	2.3E-8	39	63	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.325	39	61	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	41	61	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.78E-9	91	118	No hit	No description
Pfam	PF13912	1.6E-13	95	120	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.245	96	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.051	96	118	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
NSPTEEEYLA LCLLMLAKGT TAATNYDHSS PSPSLELCYK CKLCNKSFPN HQALAGHKAS 60 HRKPVGVVDD DQSETASAFT TSKTISKVIS VNVKTHECSI CHRTFPSGQA LGGHKRRHYD 120 GGSKSGGTGC DGRFDSEKKG MDLSLISQHD FDLNLPALPE LPMV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269\|PubMed:10929106, ECO:0000269\|PubMed:15333755, ECO:0000269\|PubMed:18216250, ECO:0000269\|PubMed:20619483, ECO:0000269\|PubMed:21852415, ECO:0000269\|PubMed:22709441}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269\|PubMed:10806347, ECO:0000269\|PubMed:15333755, ECO:0000269\|PubMed:20619483, ECO:0000269\|PubMed:21852415}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079586.1	1e-119	zinc finger protein AZF2
Swissprot	Q9SSW2	3e-34	AZF2_ARATH; Zinc finger protein AZF2
TrEMBL	A0A067KAM0	1e-118	A0A067KAM0_JATCU; Uncharacterized protein
STRING	cassava4.1_016481m	1e-45	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1327	32	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	2e-36	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	105639991

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Ortiz-Espín A, et al. Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions. J. Exp. Bot., 2017. 68(5): p. 1025-1038 [PMID:28184497]