PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4U28942.10 | ||||||||
Common Name | GRAS44, JCGZ_12067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GRAS | ||||||||
Protein Properties | Length: 200aa MW: 22167.3 Da PI: 8.3312 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 139.3 | 3.8e-43 | 7 | 193 | 184 | 374 |
GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpre 278 ++ e++++++L++ +gEal+ n++l+l ++ + ++ ++L k+l+P++v++ve+e+ +++ F++rf+++l++ysa++dslea++p + Jcr4U28942.10 7 DSDETFRPSALKLVRGEALIMNCMLHLPHFIYRAPDSVA---SFLTGAKTLNPRLVTLVEEEVGPiGDGGFVNRFMDSLHHYSAVYDSLEAGFPMQ 99 5668899**********************9966655555...9*******************9988****************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373 s++r+ vEr++lg++i +a + r e+ ++ ++l+++GFk+ ++s + +qaklll ++ dgyrvee+ + lvlgWk+r+++s+S W Jcr4U28942.10 100 SRARALVERVFLGPRIAGSLARIYRTRGEKDA--GSYGDWLGAVGFKAGNISFANHCQAKLLLGLFN-DGYRVEESgCNRLVLGWKSRRILSASIW 192 ************************99877665..889999***************************.******99578999************** PP GRAS 374 r 374 + Jcr4U28942.10 193 T 193 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.311 | 1 | 173 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-40 | 7 | 193 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
FHQCRLDSDE TFRPSALKLV RGEALIMNCM LHLPHFIYRA PDSVASFLTG AKTLNPRLVT 60 LVEEEVGPIG DGGFVNRFMD SLHHYSAVYD SLEAGFPMQS RARALVERVF LGPRIAGSLA 120 RIYRTRGEKD AGSYGDWLGA VGFKAGNISF ANHCQAKLLL GLFNDGYRVE ESGCNRLVLG 180 WKSRRILSAS IWTSPSESDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-19 | 33 | 193 | 220 | 379 | Protein SCARECROW |
5b3h_A | 2e-19 | 33 | 193 | 219 | 378 | Protein SCARECROW |
5b3h_D | 2e-19 | 33 | 193 | 219 | 378 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM405266 | 0.0 | KM405266.1 Jatropha curcas GRAS44 protein (GRAS44) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012078195.1 | 1e-145 | nodulation-signaling pathway 2 protein | ||||
Swissprot | Q5NE24 | 1e-108 | NSP2_MEDTR; Nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A067KKJ1 | 1e-143 | A0A067KKJ1_JATCU; GRAS44 protein | ||||
STRING | XP_006434151.1 | 1e-122 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6264 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 5e-76 | GRAS family protein |
Publications ? help Back to Top | |||
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