PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S27090.40
Common NameJCGZ_01635, LOC105629854
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 468aa    MW: 52836.5 Da    PI: 5.015
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S27090.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-15106195198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f k+l++s+v+   ++ lp +f++ h  +k +++t+ le+e+g++  v++i ++    + l++GWk F++ n L egD+++F+l +  +  ++v +
  Jcr4S27090.40 106 FAKALVRSNVTVGFWMHLPMRFCKLHL-PK-NDTTVFLETEDGEEHIVNYIAER----TALSGGWKAFCSTNMLHEGDVLIFHLLKPLR--FKVYI 193
                    889********************8884.43.5679***************4444....55***********************876444..47777 PP

                    E- CS
             B3  97 fr 98 
                    +r
  Jcr4S27090.40 194 VR 195
                    66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2199195IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-1999196IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-22104195No hitNo description
SMARTSM010192.9E-14106197IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337106197IPR003340B3 DNA binding domain
PfamPF023626.0E-14106195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDAQEDQAST PSPPSQSKQI TIYSYPKTRK RKSQGSKTKL TQIHDDSPQP KSGTELVLYD  60
KSGKSTSYKP KRAVVNDFYD NSESKSSAME RAEEIQASLE ASFPSFAKAL VRSNVTVGFW  120
MHLPMRFCKL HLPKNDTTVF LETEDGEEHI VNYIAERTAL SGGWKAFCST NMLHEGDVLI  180
FHLLKPLRFK VYIVRGTGTA KANGELDSLK VDAPEEQIKF VDKDIESNKR TKNLDVSPVG  240
LMQEQNEEKS LMILKEGHGA NQSDNENEDQ ESKLLEVTTS SGSVINFKDI DSIESFSVLV  300
NDLAVDSELS DHHRTKYYEL CCSQSSFLHD NLLKSINYKL AAEIIIGTVN ISEAIRASTL  360
SNSHADFAVW DKTLKGFELL GMNVGFLRSR LNRLMSLATE SEEAVESECR EVRLEQARID  420
EEMKSLELKL TELKEERERL DAEIEALKVN AEKHELMFQE AVNAPWMF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732TRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066892.10.0B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLA0A067L1H90.0A0A067L1H9_JATCU; Uncharacterized protein
STRINGcassava4.1_006729m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-34B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]