PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S21842.10

Common Name

JCGZ_03844

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

BBR-BPC

Protein Properties

Length: 231aa MW: 25370.9 Da PI: 10.6963

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S21842.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	247.8	7.1e-76	55	231	134	301
GAGA_bind 134 alpieeaaeeakekkkkkkrqrakkpkekkak........kkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalr 220 ++pi++ a++a+ +k+++++++++k+k++k + + k++++kk+++k++++ +++++ek+++d+ ++ ++D s++P P CsCtG+ r Jcr4S21842.10 55 VTPIRSVAPSAEPAKNNNSGSKPAKTKKQKPSikvsnqmpSRISKPKQPKKSSRKKGQStPEANREKRNLDVDIDIRNFDFSGVPSPFCSCTGMHR 150 55555555555555555555555555554444311111111122233333334333333356999***************************** PP GAGA_bind 221 qCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +CYkWG+GGWqS+CCtt+iS yPLP+s++r gaR+agrKmS+ga+ klL +LaaeGydls+pvDLk+hWA+HGtnkfvti+ Jcr4S21842.10 151 VCYKWGAGGWQSSCCTTNISEYPLPMSSTRAGARMAGRKMSNGAYLKLLLRLAAEGYDLSHPVDLKNHWARHGTNKFVTIK 231 ******************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.9E-73	23	231	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	7.1E-69	70	231	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MMGSYSNRNH MIPEASAGAS VPHFAWFYPN VYPTPKSSSF NSQGIPIDGQ QGLPVTPIRS 60 VAPSAEPAKN NNSGSKPAKT KKQKPSIKVS NQMPSRISKP KQPKKSSRKK GQSTPEANRE 120 KRNLDVDIDI RNFDFSGVPS PFCSCTGMHR VCYKWGAGGW QSSCCTTNIS EYPLPMSSTR 180 AGARMAGRKM SNGAYLKLLL RLAAEGYDLS HPVDLKNHWA RHGTNKFVTI K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012069328.1	1e-173	protein BASIC PENTACYSTEINE7
Refseq	XP_012069329.1	1e-173	protein BASIC PENTACYSTEINE7
Refseq	XP_012069330.1	1e-173	protein BASIC PENTACYSTEINE7
Refseq	XP_020534087.1	1e-173	protein BASIC PENTACYSTEINE7
Swissprot	O82286	3e-73	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	A0A067L8I4	1e-171	A0A067L8I4_JATCU; Uncharacterized protein
STRING	cassava4.1_015308m	1e-130	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16430	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	2e-73	basic pentacysteine 7

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]