PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S13195.40
Common NameJCGZ_14281, LOC105642873, WRKY2, WRKY52
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 293aa    MW: 33182.7 Da    PI: 5.2028
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S13195.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.11.6e-27104163258
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                    dDgy+WrKYGqK++ g++fpr+Y+rC ++   gC + k+v+rs++dp+++e+tY+g+H++
  Jcr4S13195.40 104 DDGYSWRKYGQKDILGANFPRGYFRCIHRhsqGCLAIKQVQRSDQDPSIFEVTYRGRHTC 163
                    8*************************9988889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-2791164IPR003657WRKY domain
PROSITE profilePS5081122.79198161IPR003657WRKY domain
SuperFamilySSF1182901.96E-24100163IPR003657WRKY domain
SMARTSM007742.9E-39103165IPR003657WRKY domain
PfamPF031065.0E-26104163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDLEQKNLIN ELSQGKELAE QLRNHLNPSS SLETRLFLVD KLLSSYEKAL CLLNWVELSH  60
SYPNSTPTTD VSLQPSKKKR KTQIRCTEEV KVCSGTGAQA GPPDDGYSWR KYGQKDILGA  120
NFPRGYFRCI HRHSQGCLAI KQVQRSDQDP SIFEVTYRGR HTCVQASHFT SVNENSIQNK  180
DHHHQQQIAK EVKTQDLEIK KESFPSLSFL DELNESDESN NFAASLSPTS DQSNYFSDSY  240
GISLNVRTPD SNLIDIISTS NSVANSPIGD LDFSNFDFEI EPNFQFDNLE FFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-19104163968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT9354980.0KT935498.1 Jatropha curcas isolate IC565735 WRKY transcription factor (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083242.10.0probable WRKY transcription factor 46
TrEMBLS5CFV80.0S5CFV8_JATCU; WRKY transcription factor
STRINGPOPTR_0014s09190.17e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-45WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]