PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S12859.50

Common Name

JCGZ_24542, LOC105631236

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 338aa MW: 37574.7 Da PI: 10.1639

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S12859.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.7	4.6e-16	42	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ Jcr4S12859.50 42 EWSEGAVSSLLEAYESKWILRNRAKLKGHDWEDVARYVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 125 5***********************************854444555566679**************99997......4699999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.9E-20	40	125	No hit	No description
SuperFamily	SSF101447	6.8E-6	178	187	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDKETNQESP SLPSTIIKED SSRKQLGGSG GLGGGDRLKR DEWSEGAVSS LLEAYESKWI 60 LRNRAKLKGH DWEDVARYVS SRANCTKSPK TQTQCKNKIE SMKKRYRSES ATADGSSWPL 120 YPRLDLLLRG SAAAATAVPP QQPLQPQLPP PLQSVPVSNH PPLMLLEQTP VVMPQPPPPP 180 PPPPPPPPAI TTAQNSHGSN GIDRGLKEDG GGTKLSDHVS DKNNAVETDS STPALYSDKE 240 KFRSKRMKMK MERKKRRRRE EWEIADSIRW LAEVVVRSEQ ARMDTMREVE KMRIEAEAKR 300 GEMDLKRTEI IANTQLEIAK LFAGVGKAVD SSLRIGRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	255	KRMKMKMERKKR
2	252	258	RKKRRRR
3	252	259	RKKRRRRE
4	253	258	KKRRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430755	0.0	KF430755.1 Jatropha curcas microsatellite pJiSSR3395 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068677.1	0.0	trihelix transcription factor ASIL1
TrEMBL	A0A067KZW7	0.0	A0A067KZW7_JATCU; Uncharacterized protein
STRING	cassava4.1_011546m	1e-167	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	8e-94	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	105631236

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]