PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S12236.10 | ||||||||
Common Name | JCGZ_06329, LOC105635035 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 26260.2 Da PI: 4.5139 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.8e-19 | 56 | 106 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+ +++g Jcr4S12236.10 56 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAAMSIKG 106 68*****998.**********843...6**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-13 | 56 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.275 | 57 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-35 | 57 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-21 | 57 | 114 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-32 | 57 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 58 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.33E-31 | 58 | 115 | No hit | No description |
PRINTS | PR00367 | 8.8E-11 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSEESTSSNS SSSPLPSPSL PTTAAVGTAI SKSKIIQEPV EKKAPKRARD NSSKHPVYRG 60 VRMRSWGKWV SEIREPRKKS RIWLGTFPTA EMAARAHDVA AMSIKGNAAI LNFPEIVDSL 120 PRPVSLMPRD IQAAAAKAAS MVEFNSLSSS SSSSSLLSES SSSSSSSSVS VSDDVSESEE 180 LSEIVELPNI EGSFDSAESV TEFILFDSVD GWVYPPPQDM CGEFSDQLMG LESLISSNFG 240 ASVWD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-21 | 48 | 115 | 5 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012073419.1 | 1e-172 | dehydration-responsive element-binding protein 3 | ||||
Swissprot | Q9LYD3 | 4e-68 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A067KQN0 | 1e-170 | A0A067KQN0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_032457m | 2e-94 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-62 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105635035 |
Publications ? help Back to Top | |||
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