 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Jcr4S11066.10 |
| Common Name | GRAS22, JCGZ_11271, LOC105637063 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
| Family |
GRAS |
| Protein Properties |
Length: 573aa MW: 63051.1 Da PI: 4.6864 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Jcr4S11066.10 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 367.6 | 1.6e-112 | 206 | 573 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97
++LlecA+ + ++ e+a + L +++e +s++gdp++R+a+yfteAL +r++ + k+l++ et+ ++ + ++k++++++P+ kf+hlt
Jcr4S11066.10 206 LKALLECAQLAE-SEPEKAVKSLIKIRESVSEHGDPTERVAFYFTEALYSRVSL---QAEKSLTMFETT---CEDFTLSYKALNDACPYSKFAHLT 294
689******655.578888899999****************************9...778888888888...9999******************** PP
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
aNqaIlea++g++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p g +l +tg+rL++f + l+++fef++ + + +++l+
Jcr4S11066.10 295 ANQAILEATDGASKIHIVDFGIVQGVQWAALLQALATRSTGKPaRIRISGIPAPVVGksPGASLLATGNRLRDFSKLLDLNFEFEP-ILTPIQELD 389
***************************************66555*********9988889999***********************.799****** PP
GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
+++ v+p+E+laVn++lql++llde+ + + L++ ksl+Pk+v++ e ea++n+ +l+rf +al+yysa+f+sle +l r+s er vE
Jcr4S11066.10 390 ESSFGVDPDEVLAVNFMLQLYNLLDETPVAVE---TALRMAKSLNPKIVTLGEYEASLNQIGYLDRFKNALRYYSAVFESLEPNLNRDSTERLQVE 482
************************99888877...9************************************************************ PP
GRAS 287 rellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
r llgr+i v+ e+a rrer+e +e+W+ +e++GF++v+ls++a++qak ll +++ s y++ e++ ++ l W++ pL++vS+Wr
Jcr4S11066.10 483 RLLLGRRIAGVIGPEEAGtRRERMEDKEQWKILMERCGFESVALSHYAMSQAKILLWNYNySSLYSLIESQPGFLcLAWNHVPLLTVSSWR 573
*************999877*****************************************9999998877655544**************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 573 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ HHHHQQQLLG LNSFPLNPWP ASISANPNLG 60
YAGLTGSGFT EPFQVSGGGD TGEPGFQFPQ MEHHSSGFRF SDFGGGAGGE FDSDEWMDSL 120
IGGGDSTDSS NLPSGCDAWQ NNADFGLYGP DPFTACPTRL SVACSPPSDL NRVIFTTETQ 180
KSPNLVTAWA PSPPTLPPQA SAPELLKALL ECAQLAESEP EKAVKSLIKI RESVSEHGDP 240
TERVAFYFTE ALYSRVSLQA EKSLTMFETT CEDFTLSYKA LNDACPYSKF AHLTANQAIL 300
EATDGASKIH IVDFGIVQGV QWAALLQALA TRSTGKPARI RISGIPAPVV GKSPGASLLA 360
TGNRLRDFSK LLDLNFEFEP ILTPIQELDE SSFGVDPDEV LAVNFMLQLY NLLDETPVAV 420
ETALRMAKSL NPKIVTLGEY EASLNQIGYL DRFKNALRYY SAVFESLEPN LNRDSTERLQ 480
VERLLLGRRI AGVIGPEEAG TRRERMEDKE QWKILMERCG FESVALSHYA MSQAKILLWN 540
YNYSSLYSLI ESQPGFLCLA WNHVPLLTVS SWR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KM405249 | 0.0 | KM405249.1 Jatropha curcas GRAS22 protein (GRAS22) mRNA, complete cds. |
