PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S10510.10 | ||||||||
Common Name | JCGZ_21706, LOC105649782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 255aa MW: 29416.8 Da PI: 4.4622 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 28 | 82 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++ q+e Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k+ Jcr4S10510.10 28 KKRRLSAGQVEFLERNFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARFKN 82 5568999*********************************************995 PP | |||||||
2 | HD-ZIP_I/II | 128 | 3.9e-41 | 28 | 118 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+ qv++LE++Fe e+kLeperK +la+eLglqprqva+WFqnrRAR+k+kqlEkdy++Lk++yd+lk++ + L ke+++L++++ Jcr4S10510.10 28 KKRRLSAGQVEFLERNFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARFKNKQLEKDYDSLKASYDKLKSDYAILLKEKDNLKNQIV 118 9**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-19 | 19 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.779 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-17 | 25 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.62E-16 | 26 | 84 | No hit | No description |
Pfam | PF00046 | 9.1E-16 | 28 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 30 | 91 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.0E-6 | 54 | 63 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.0E-6 | 63 | 79 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.5E-16 | 83 | 124 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDAEFFQPLI KEENGDEDFD VCFNPPGKKR RLSAGQVEFL ERNFEVENKL EPERKIQLAK 60 ELGLQPRQVA IWFQNRRARF KNKQLEKDYD SLKASYDKLK SDYAILLKEK DNLKNQIVSL 120 KEKMLAREKG RENLGPTLDA INSSKAEVDQ NPVANTVSEV VSSEQTVMIF IKQEDASSVK 180 SDVFDSDSPH SFLEPADSSH VLEPEQSDFS QDEEDDLSRS LLPPPYFPKL YHDPPANSCS 240 FEFPVEDQPF WSWTY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 83 | RRARFKNKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091954.1 | 0.0 | homeobox-leucine zipper protein ATHB-54 | ||||
TrEMBL | A0A067JML6 | 0.0 | A0A067JML6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_012634m | 1e-136 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-40 | homeobox 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 105649782 |
Publications ? help Back to Top | |||
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