PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S10212.10
Common NameJCGZ_07091, LOC105637560, WRKY28
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 331aa    MW: 36927.3 Da    PI: 7.8937
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S10212.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30164223159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rsaedp+v++ tYegeHnh 
  Jcr4S10212.10 164 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSAEDPSVLVATYEGEHNHM 223
                    58***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.419159222IPR003657WRKY domain
SuperFamilySSF1182904.05E-25162222IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-29162224IPR003657WRKY domain
SMARTSM007746.9E-35164224IPR003657WRKY domain
PfamPF031066.1E-25165222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDSSTWVSTS LDLNINPFKH IDAIPKRESE AEVVDFTGFE RKVPAVKEET SVLIEELNRI  60
NAENKKLTAM LTVLCENYNA LEKHLADLMS KNSDKKDVGI TSRKRKAESE DYSNMIARTN  120
NGTTESSSSD ELDSTTYKNQ KESIRTSTSK FYLRTDPSDA SLVVKDGYQW RKYGQKVTRD  180
NPCPRAYFKC SFAPSCPVKK KVQRSAEDPS VLVATYEGEH NHMQLSQQPA DHLSNLGSSL  240
RTQVPAITDP TRVASGPNTV TLDLIRSTGK LKDDDISAKR DHVQAISSEN PAIQQVLAQQ  300
MASSLTRDPN FTSALAAAIC GRFNETRIQK W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-191632221371WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00465DAPTransfer from AT4G31800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852800.0KC485280.1 Jatropha curcas WRKY transcription factor 28 (WRKY28) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076438.10.0WRKY transcription factor 18
TrEMBLS5CFS70.0S5CFS7_JATCU; WRKY transcription factor 28
STRINGcassava4.1_024650m1e-120(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.15e-82WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]