PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08740.10
Common NameJCGZ_27080, LOC105647158
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WOX
Protein Properties Length: 392aa    MW: 43900.8 Da    PI: 7.8229
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08740.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox696.1e-2283142357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Jcr4S08740.10  83 SRWNPTPEQLRTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 142
                    7*****************99**************************************97 PP
2Wus_type_Homeobox115.23.1e-3782144365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
      Jcr4S08740.10  82 SSRWNPTPEQLRTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 144
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.1E-580147IPR001356Homeobox domain
SuperFamilySSF466891.5E-1283149IPR009057Homeodomain-like
PfamPF000461.2E-1983142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-983142IPR009057Homeodomain-like
CDDcd000862.62E-684144No hitNo description
PROSITE profilePS5007111.20888143IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MWMMGYNDGG DFNMPTDSFN GRRLRPLIPR TPSLPPSNNT SNTSPPRLRT LYGSDFFSLN  60
HHLASMADQS KRDIHTQPVV VSSRWNPTPE QLRTLEELYR RGTRTPSAEQ IQHITAQLRR  120
YGKIEGKNVF YWFQNHKARE RQKRRRQMES AAAPDYEQQQ QQHRDIEIFE RKESGANRTN  180
NEGEQTKSWA PSTNCSTLPE ESIAIQRPAK AAVVAECRSS PDGWIQFDEV ELERRRNFME  240
RNATWQMMQL SCPSPTHLIN TNCSSTITSC STITTASTRP APTIRTMDPK LIKTCSNDLN  300
IFIAPYRENG HGLINHFSNG IINEENNIGS GESQTLQLFP LGGNGGAGGG GGGGGCSDGN  360
GNINDKETDT SAVAADMNAT PYPFFEFLPL KN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088544.10.0WUSCHEL-related homeobox 1
TrEMBLA0A067JV940.0A0A067JV94_JATCU; Uncharacterized protein
STRINGXP_002532093.11e-174(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.19e-56WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]