PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07858.10
Common NameJCGZ_06524, LOC105628884
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WOX
Protein Properties Length: 295aa    MW: 33742.6 Da    PI: 6.8745
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07858.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-193798257
                   T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++R+t+t++q+++L++l+++   r p+a+++++++++l    +++ ++V++WFqN++a+e++
  Jcr4S07858.10 37 STRWTPTTDQIRILKDLYYNsgVRSPNADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 98
                   58*****************8789*************************************97 PP
2Wus_type_Homeobox115.42.8e-3736100265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt++Qi+iL++ly+ sG+r+Pn+++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
      Jcr4S07858.10  36 SSTRWTPTTDQIRILKDLYYnSGVRSPNADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 100
                        789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1131103IPR009057Homeodomain-like
PROSITE profilePS5007110.1393399IPR001356Homeobox domain
SMARTSM003891.9E-435103IPR001356Homeobox domain
CDDcd000862.54E-538100No hitNo description
Gene3DG3DSA:1.10.10.602.2E-63898IPR009057Homeodomain-like
PfamPF000469.6E-173898IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDSNQQQVQQ QQHHQLANEE NSGVGSAKGS FLCRQSSTRW TPTTDQIRIL KDLYYNSGVR  60
SPNADQIQRI SARLRQYGKI EGKNVFYWFQ NHKARERQKK RFTTDVPMQQ QQQQQQQQQQ  120
RTASATVKPD QDLSFYNKYP SFTSPGFSCS ASPSSNSGFT VGQMGNYGHG SVTMEKSFRE  180
CSISAGGSMS SNYGWVGINE NPYSSGSSSY SYFDKQKSSY METLFEQHDE EQEEEQEAEI  240
ETLPLFPTQR ENINGFCSNI KHNPLSYSQY HNWYGSAQES NNNTFRTTSL ELSLN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065761.20.0protein WUSCHEL
SwissprotQ8LL115e-80WUS_PETHY; Protein WUSCHEL
TrEMBLA0A067LE690.0A0A067LE69_JATCU; Uncharacterized protein
STRINGcassava4.1_028209m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.18e-41WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]