PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S07308.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 380aa MW: 41041.7 Da PI: 8.4714 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 82.3 | 7.7e-26 | 191 | 267 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekk...................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQ+++Il+RRq+Rak+e ekk + pylheSRh+hA+rR+Rg+gGrF Jcr4S07308.10 191 EEPVFVNAKQFHGILRRRQARAKAELEKKaikvrklslceikptvtgaWGKLLALPYLHESRHQHAMRRARGCGGRF 267 69******************************************99994456788*********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.9E-28 | 189 | 270 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 31.499 | 190 | 270 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-26 | 192 | 267 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 195 | 215 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MPAKSENENH RLEQTTQTVL QSAIYSQPWW RGVGNSLNFG ETASKSSSAK NLNGSQPDGA 60 IQSQANSGLD NGANTNKDVQ ISVASQPVAV STTCIVEYEA MQRAPKHRYG SNGLEHHLKQ 120 VASSTPASMD THLEPNSQME LVGHSIVLTS YPYSDPQYGG MLASYAPQVV VPSQLYGMHH 180 ARIPLPLEME EEPVFVNAKQ FHGILRRRQA RAKAELEKKA IKVRKLSLCE IKPTVTGAWG 240 KLLALPYLHE SRHQHAMRRA RGCGGRFLSN KKSESSSSNP ASDEDGSSGA NPSRQPVLFS 300 GSEWLPKNGT GDLDSSSCQQ EGKGSTAQEM QACVSSNGNA HGLSSMYHPP SSDGLTGGFL 360 VLQRETTHRN GVSNGVLPIN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-16 | 191 | 275 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020532892.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_020532893.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_020532894.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_020532895.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_020532896.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A067LH09 | 0.0 | A0A067LH09_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_011264m | 1e-163 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8962 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12840.3 | 4e-41 | nuclear factor Y, subunit A1 |