PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06653.20
Common NameJCGZ_23496, LOC105647690
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 332aa    MW: 34880.2 Da    PI: 5.8549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06653.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.2e-10180224554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    h+++Er RR+ri +++  L+el+P+a      K + a +L + v+Y+k L
  Jcr4S06653.20 180 HSIAERLRRERIAERMKALQELVPTA-----NKTDRAVMLDEIVDYVKFL 224
                    99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.96E-11173229No hitNo description
SuperFamilySSF474594.32E-15173235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.253175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15177239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-7180224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAGNPPPEGL GDDFFEQILA VQPGYGAGGG GSGGEVVGST LPMMGLQLGT GGGGGGGGGG  60
LRNNNMGMMP LGLNLEHHGF LRQQEDDGGA LDTNNNASSS STTSGINDRD SVHMASLFPT  120
FGQLHSQSIR PTPPPPPSGP PQLHQPFHGQ PTPGAVSAIS QPPAIRPRVR ARRGQATDPH  180
SIAERLRRER IAERMKALQE LVPTANKTDR AVMLDEIVDY VKFLRLQVKV LSMSRLGAAG  240
AVAQLVADIQ PSSVEAGESI EGGANQQPWE KWSNDGTEQQ VAKLMEEDIG AAMQFLQSKA  300
LCIMPISLAS AIFRTHPPDA PSIVKPESNT PS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089261.10.0transcription factor UNE12 isoform X4
SwissprotO227682e-85UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A067JLG40.0A0A067JLG4_JATCU; Uncharacterized protein
STRINGcassava4.1_011723m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.37e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]