PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S06621.10 | ||||||||
Common Name | JCGZ_23923, LOC105645472 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 145aa MW: 17294.5 Da PI: 4.2829 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 52.6 | 8.7e-17 | 109 | 145 | 5 | 41 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGI 41 +++e+++kyF+lpi++AAke++v+lTvLK++CR+++I Jcr4S06621.10 109 LEMEEIKKYFDLPITKAAKEMNVGLTVLKKRCRELNI 145 789*******************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 10.637 | 91 | 145 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.5E-13 | 109 | 145 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 145 aa Download sequence Send to blast |
MDSKRTDQEL LLNIPKNEYS FDTDWLNLDD TFQKVSEFPP LESFFELDSL TLPHYKNYGF 60 EGFEEINLDI DDYSFLDSTL LLDNPYDRYC ENVEEERRLR NGRKMSVPLE MEEIKKYFDL 120 PITKAAKEMN VGLTVLKKRC RELNI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012086468.1 | 1e-101 | protein RKD4 | ||||
TrEMBL | A0A067JSK1 | 1e-100 | A0A067JSK1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_021485m | 4e-29 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53040.1 | 3e-15 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105645472 |
Publications ? help Back to Top | |||
---|---|---|---|
|