PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06437.30
Common NameJCGZ_00647, LOC105649096, WRKY56
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 327aa    MW: 36727.3 Da    PI: 5.5806
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06437.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.47.2e-24132193159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +dDg++WrKYGqK++ ++++pr+Y+rCt++   gC+++k+v+r ae+p+   +tY g+H+++
  Jcr4S06437.30 132 VDDGHAWRKYGQKVILKAKYPRNYFRCTHKfdqGCQATKQVQRIAEEPSSYRTTYYGHHTCN 193
                    59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-25118193IPR003657WRKY domain
SuperFamilySSF1182902.48E-24125193IPR003657WRKY domain
PROSITE profilePS5081120.599127190IPR003657WRKY domain
SMARTSM007742.9E-36132194IPR003657WRKY domain
PfamPF031062.0E-23133192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
METSGPENLP TDRKSLIDEL VSGREFANQL KLALKDQSIN GDAGSVPAED LVMRIVNSFT  60
NSLSIFSRVI DSDEVSQFPA STSFGSPLWD GCRKSEESDE STKSTSRMKE RRGCYKRRKT  120
SHSWTRDTPN LVDDGHAWRK YGQKVILKAK YPRNYFRCTH KFDQGCQATK QVQRIAEEPS  180
SYRTTYYGHH TCNNLLRASQ HLILDSPNAD DSSIILSFTT KQENKNNNNN NNPFFTPFES  240
STSIKQESKD DTVGLPAEDH TQPTLSHYLM STHDHHQAGD VISGVNSSST ISDTSCEFGL  300
DMDMIVNSVG GDFDEEDILK SFGYFDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22132192868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4853080.0KC485308.1 Jatropha curcas WRKY transcription factor 56 (WRKY56) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091041.10.0probable WRKY transcription factor 70
TrEMBLS5CKI40.0S5CKI4_JATCU; WRKY transcription factor 56
STRINGcassava4.1_011680m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-35WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]