PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06435.20
Common NameJCGZ_07606, LOC105638089
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 549aa    MW: 63572.7 Da    PI: 6.9095
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06435.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.41.3e-30387471186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW+k+ev aLi++r+ +e+++++  lk+plWeevs  m   g++rs+k+Ckekwen+nk+++k ke++kkr +++s+tc+yf+ql+
  Jcr4S06435.20 387 RWPKNEVEALIQVRSGIESKFQEPGLKGPLWEEVSYLMGTMGYQRSAKRCKEKWENINKYFRKAKESRKKR-AQQSKTCSYFNQLD 471
                    8*********************************************************************8.78889********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.969380444IPR017877Myb-like domain
PfamPF138375.6E-20386473No hitNo description
CDDcd122035.14E-25386451No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MQPSYGVPDI HRHQQNQRLH HQFIKNDDCC SSVFPISNPS QNLNHSFQQK QQPEQQIFLQ  60
QQQPTITHQL FQNQPQYQHF RPFQQQIYQH PQSTHPPFFP AKFKSDLDND KKATTDFLNG  120
VTHSWHPQED STSIKEPFWK QLSRSNCENG EQEADERNKN KYRKPLGTRE VDERWKDLEN  180
KYRLFGELEA IYSLAKVAET NQTGSGSALT GENSPTKNIA ALSLPFTAIH AQNIANASAT  240
SNHGSDNSTG EESSLRKTQK RLRKRKMKEK LTSMAGFFEN LVKQVMDHQE MLHKKFLEVI  300
ERMDKERTER EEVWRRKEAE KYNREAISRA HDQALASNRE AQIVSFVEKI TGQRIDLPIR  360
KTHLLLQQEV PKEPNEELIK GSDAQNRWPK NEVEALIQVR SGIESKFQEP GLKGPLWEEV  420
SYLMGTMGYQ RSAKRCKEKW ENINKYFRKA KESRKKRAQQ SKTCSYFNQL DQLYSKAVVN  480
SSPLISNSEI GIDKEGYSEL LEAFITGSAA NPSRLEFDGS HEMEKEEEVE DDNEEEGSDG  540
NDNEIGMVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259265KRLRKRK
2259266KRLRKRKM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077204.10.0trihelix transcription factor GT-2 isoform X2
TrEMBLA0A067KP100.0A0A067KP10_JATCU; Uncharacterized protein
STRINGcassava4.1_004069m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-52Trihelix family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]