PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S06435.10 | ||||||||
Common Name | LOC105638368 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 24220.4 Da PI: 6.2561 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.9e-08 | 14 | 49 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+teEd ll ++v+ +G +R++k+c++rw++yl Jcr4S06435.10 14 RGSWSTEEDHLLREYVRIHGL------------KRCGKSCRLRWLNYL 49 89******************4............5999*********97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.3e-16 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+ +++k+lG++ W++Ia +++ gRt++++k++w++ Jcr4S06435.10 55 RGNITEDEEDLIFRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 99 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.276 | 9 | 49 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.59E-23 | 12 | 96 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-4 | 13 | 51 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-7 | 14 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-14 | 15 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.048 | 50 | 104 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-16 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 55 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-25 | 57 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.62E-11 | 59 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRSPNFPKE GLSRGSWSTE EDHLLREYVR IHGLKRCGKS CRLRWLNYLR PDIKRGNITE 60 DEEDLIFRLH KLLGNRWSLI AGRLPGRTDN EIKNYWNSTL KKKIDKKQHK KKIVNADIAV 120 KTTISSHESP QVKNVIEESD PSDDGLLPST CDWEMMTVDI NGEQINLSDF LQTEDFSNII 180 LPATHEGEAD FFSEAILKDW TGKELFPLDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 12 | 105 | 5 | 109 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034687 | 0.0 | KM034687.1 Jatropha curcas clone JcMYB067 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012077551.1 | 1e-140 | transcription factor WER | ||||
TrEMBL | A0A097HUN7 | 1e-139 | A0A097HUN7_JATCU; MYB family protein | ||||
STRING | POPTR_0006s23810.1 | 2e-57 | (Populus trichocarpa) | ||||
STRING | XP_004303467.1 | 2e-57 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 9e-47 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 105638368 |