PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06397.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 377aa    MW: 42151.9 Da    PI: 5.888
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06397.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY29.61.4e-09126147122
                    ---SS-EEEEEEE--TT-SS-E CS
           WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                    ldDg++WrKYGqK++ g+++pr
  Jcr4S06397.20 126 LDDGFSWRKYGQKDILGAKHPR 147
                    59*******************9 PP
2WRKY47.14.8e-151682072359
                    EEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY  23 sYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +YYrCt++   gC ++k+v+rs+edp+++eitY+g+H+++
  Jcr4S06397.20 168 AYYRCTHRivqGCLATKQVQRSDEDPTIFEITYRGRHTCT 207
                    7******9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.237121204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-25123208IPR003657WRKY domain
SuperFamilySSF1182905.23E-19125208IPR003657WRKY domain
SMARTSM007741.9E-37126208IPR003657WRKY domain
PfamPF031061.5E-6127147IPR003657WRKY domain
PfamPF031061.5E-12168206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MENMGDWEQK NLVNELTTGR ELARQLQVHL NIPSSSREAR EMLVQRILNS YEKALSILNL  60
SNSSIRETTL TPAVAIGGLS ESPLSGSPRS EDSDQDPKDA SRKRKSTLRW TQQVRVNPGM  120
GLEGPLDDGF SWRKYGQKDI LGAKHPRLRS LLSIKQHVDS TLRLIQGAYY RCTHRIVQGC  180
LATKQVQRSD EDPTIFEITY RGRHTCTQAS HLLPPIQPLP ENQEPNTSRE LQNQENQQQS  240
QDLLLNFRSE LKVITDGLDS QEQSIPPFHF PSTLNKNVTA ENQVFSPSVV DTSFMESYSP  300
PFISPSTSGT NYFSARSSGM HQNFGGSNQS LQTCESELTD IISVATSATN SPTAGLDFPF  360
GNVEFDPNFT FDNRGFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-17126206868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4853050.0KC485305.1 Jatropha curcas WRKY transcription factor 53 (WRKY53) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090116.10.0probable WRKY transcription factor 53
TrEMBLS5CS920.0S5CS92_JATCU; WRKY transcription factor 53
STRINGcassava4.1_010398m1e-168(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.18e-47WRKY family protein