PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S06148.40 | ||||||||
Common Name | JCGZ_20784, LOC105645985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | YABBY | ||||||||
Protein Properties | Length: 126aa MW: 13942.9 Da PI: 7.8484 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 93.8 | 4.2e-29 | 10 | 103 | 2 | 92 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekeesa 92 d+ s seq+CyvqCn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++ a + hl++s+ + ll+e +++ n+ n+++ ++ Jcr4S06148.40 10 DHLSPSEQLCYVQCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALILPSANQFHLGHSFYSPshnLLDEIPNQTPNFLINQTNVNNF 103 68899*****************************************999999999999999***998774556666666666666666655543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.2E-27 | 14 | 73 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MSSSSSLSVD HLSPSEQLCY VQCNICDTVL AVSVPCTSLF KTVTVRCGHC TNLLPVNMRA 60 LILPSANQFH LGHSFYSPSH NLLDEIPNQT PNFLINQTNV NNFSVPSRGV THDELPRPPV 120 INRRKI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087132.1 | 1e-84 | axial regulator YABBY 1 | ||||
Swissprot | Q01JG2 | 2e-30 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 2e-30 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A067JS14 | 3e-83 | A0A067JS14_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_016118m | 8e-77 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 7e-26 | YABBY family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105645985 |
Publications ? help Back to Top | |||
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