PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S06030.10 | ||||||||
Common Name | JCGZ_26841, LOC105630369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 167aa MW: 18601.4 Da PI: 7.1408 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00012 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H Jcr4S06030.10 40 FQCLYCPRKFYTSQALGGHQNAH 62 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.38E-6 | 38 | 67 | No hit | No description |
PROSITE profile | PS50157 | 10.845 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MADPSIYNFL NQNPPFPSNG RSSTRKNPTN PPPSSPPRLF QCLYCPRKFY TSQALGGHQN 60 AHKRERAAAA HRNTSMEANF SQQPYSNQNQ NHHGPPFLDQ YYWLEPIPNQ NHQFAPPARS 120 VSIPGGSGFY GGSATSPPLD NDIPFSPVVD LNNDDDEPVN LDLTLRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067562.1 | 1e-120 | zinc finger protein KNUCKLES | ||||
TrEMBL | A0A067L3N4 | 1e-118 | A0A067L3N4_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_026506m | 4e-49 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15014 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14010.1 | 3e-08 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105630369 |
Publications ? help Back to Top | |||
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