PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S05662.40

Common Name

JCGZ_23474, LOC105647668

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

CPP

Protein Properties

Length: 766aa MW: 83733.6 Da PI: 6.2431

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S05662.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49	1.2e-15	448	487	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+skClk+YCeCfaag +C e C+C+dC+Nk Jcr4S05662.40 448 SCKRCNCKRSKCLKLYCECFAAGLYCIEPCSCQDCFNKPA 487 689**********************************975 PP
2	TCR	53.1	6.4e-17	563	602	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeCf+ g+ Cs++C+Ce+CkN+ Jcr4S05662.40 563 RHKRGCNCKKSSCLKKYCECFQGGVGCSSNCRCEGCKNTF 602 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	7.1E-18	447	488	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.186	448	603	IPR005172	CRC domain
Pfam	PF03638	3.3E-11	450	485	IPR005172	CRC domain
SMART	SM01114	1.4E-17	563	604	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.9E-12	565	601	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence Send to blast
MELNTPNKDQ LVSAPLSQFE DSPVFNYINN LSPIDLVKSV STDQTFNSLS FSSPPLVFTS 60 PKLNPQRNAR SIIRRRQFSD PLKPELSHIK GDNNASEGVS EAVELPDSCT EQLRCATSSS 120 SAKEVTTDPL NEQLELGIEL PKAFKCVGAG PDGDIALLDA IRTDIEPEKV DKSNERHCLY 180 ESEKHLRRIC RIEQSEDEAG CDWDTLISDV SDILCFDSSI SAEQSEEQKI VDPGTISFVS 240 NVLQIPQDNT NASENMESTN CVGSSEHKMG EIGTQSTELG KKEADKIPAV LSGTLLNKLV 300 VDDAATVMDI KGKKRLSSCK QNRIRRLVFE MAGAHKKKSV CESNVSPQIS PQPDSGVAQV 360 ETHSAARMSM LSRKGIGLHL NALTTTSSDC KIVKIETLSS RQEISLALCD SEDKAMENAQ 420 QTSTDVSEDF GTSSPKTKRH KLEPVGASCK RCNCKRSKCL KLYCECFAAG LYCIEPCSCQ 480 DCFNKPAHEG TVLETRKQIE SRNPLAFAPK VIRSTDFVPE IGLTWSHLCG KVPMMQSHCI 540 LLFLLGHGLF CVDEVNKTPA SARHKRGCNC KKSSCLKKYC ECFQGGVGCS SNCRCEGCKN 600 TFGTKNGLEE DEFEGGESEI LEKNALDVNL DGKIEGGEEQ HANLPELSES ARSSIKLPMT 660 FSGKLSRSLP VIGTSTQLCS SQNPGTDLFC QPKFETHLQA IPEEETPEIL TSNRSAASVV 720 KSTSPNCKRV SPPHHGFGSS ANWRGGRKLI LRSVPPFPSL NSPHQQ

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence Send to blast

MELNTPNKDQ LVSAPLSQFE DSPVFNYINN LSPIDLVKSV STDQTFNSLS FSSPPLVFTS  60
PKLNPQRNAR SIIRRRQFSD PLKPELSHIK GDNNASEGVS EAVELPDSCT EQLRCATSSS  120
SAKEVTTDPL NEQLELGIEL PKAFKCVGAG PDGDIALLDA IRTDIEPEKV DKSNERHCLY  180
ESEKHLRRIC RIEQSEDEAG CDWDTLISDV SDILCFDSSI SAEQSEEQKI VDPGTISFVS  240
NVLQIPQDNT NASENMESTN CVGSSEHKMG EIGTQSTELG KKEADKIPAV LSGTLLNKLV  300
VDDAATVMDI KGKKRLSSCK QNRIRRLVFE MAGAHKKKSV CESNVSPQIS PQPDSGVAQV  360
ETHSAARMSM LSRKGIGLHL NALTTTSSDC KIVKIETLSS RQEISLALCD SEDKAMENAQ  420
QTSTDVSEDF GTSSPKTKRH KLEPVGASCK RCNCKRSKCL KLYCECFAAG LYCIEPCSCQ  480
DCFNKPAHEG TVLETRKQIE SRNPLAFAPK VIRSTDFVPE IGLTWSHLCG KVPMMQSHCI  540
LLFLLGHGLF CVDEVNKTPA SARHKRGCNC KKSSCLKKYC ECFQGGVGCS SNCRCEGCKN  600
TFGTKNGLEE DEFEGGESEI LEKNALDVNL DGKIEGGEEQ HANLPELSES ARSSIKLPMT  660
FSGKLSRSLP VIGTSTQLCS SQNPGTDLFC QPKFETHLQA IPEEETPEIL TSNRSAASVV  720
KSTSPNCKRV SPPHHGFGSS ANWRGGRKLI LRSVPPFPSL NSPHQQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012089232.1	0.0	protein tesmin/TSO1-like CXC 3
TrEMBL	A0A067JI62	0.0	A0A067JI62_JATCU; Uncharacterized protein
STRING	cassava4.1_024923m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2619	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-93	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Entrez Gene	105647668

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]