PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05250.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 889aa    MW: 97280.9 Da    PI: 5.7746
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05250.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-182482357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Jcr4S05250.20 24 KYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 82
                   56789****************************************************97 PP
2START140.22.1e-441623622204
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+         +e+l+d++ W +++++ e+      g  g+++l +
  Jcr4S05250.20 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGL--------IAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELVY 249
                    7899*********************************************995........567777777***********999999999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++ +a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    s++vRae lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s
  Jcr4S05250.20 250 SQIYAPTTLAPaRDFWTLRYTTSLDNGSLVVCERSLSGSGAGPNaaaASQFVRAEILPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYES 345
                    *************************************99999999999************************************************ PP

                    HHHHHHHHHHHHTXXXX CS
          START 188 glaegaktwvatlqrqc 204
                    + + ++k++ a+l++ +
  Jcr4S05250.20 346 SKVVAQKITIAALRYIR 362
                    ************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2731983IPR001356Homeobox domain
SMARTSM003891.5E-142187IPR001356Homeobox domain
SuperFamilySSF466892.78E-162286IPR009057Homeodomain-like
CDDcd000861.35E-152484No hitNo description
PfamPF000461.1E-152582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-182682IPR009057Homeodomain-like
CDDcd146861.90E-676115No hitNo description
PROSITE profilePS5084824.481152373IPR002913START domain
SMARTSM002341.8E-35161364IPR002913START domain
SuperFamilySSF559613.85E-30161366No hitNo description
PfamPF018527.0E-42162362IPR002913START domain
Gene3DG3DSA:3.30.530.208.7E-16194337IPR023393START-like domain
PfamPF086709.3E-50745888IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MAMAVAHRES SSGSINKHLT DSGKYVRYTA EQVEALERVY SECPKPSSLR RQQLIRECPI  60
LANIEPKQIK VWFQNRRCRE KQRKEASRLQ TVNRKLTAMN KLLMEENDRL QKQVSQLVCE  120
NGYMRQQLQT APAATDASCD SVVTTPQNTM RDANNPAGLL SIAEETLAEF LSKATGTAVD  180
WVQMPGMKPG PDSVGIFAIS QSCSGVAARA CGLIAEILKD RPSWFRDCRS LEVFTMFPAG  240
NGGTIELVYS QIYAPTTLAP ARDFWTLRYT TSLDNGSLVV CERSLSGSGA GPNAAAASQF  300
VRAEILPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYESSKVVA QKITIAALRY  360
IRQIAQETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAING FNDDGWSLMS CDGAEDVIIA  420
VNSTKNLGIS TNPANSLSFL GGILCAKASM LLQSQISIKS NLYFSVAFVQ NIPGTWINSS  480
NENLELENVP PAVLVRFLRE HRSEWADFNV DAYSAASLKA GSYAFPGMRP TRFTGSQIIM  540
PLGHTIEHEE LLEVIRLEGH SLAQEDAFVS RDIHLLQFTR TDLWGILEIC SGIDENAVGA  600
CSELVFAPID EMFPDDAPLL PSGFRIIPLD SKTVNLLTGV ILQKDTQDAL NTSRTLDLTS  660
SLEVGPATNH VSGDASSSHI TRSVLTIAFQ FPFESNLQDN VATMARQYVR SVISSVQRVA  720
MAISPSGLSP AIGPKLSPGS PEALTLAHWI CQSYSFYLGA DLLRSDSLGG DSVLKHLWQH  780
QDAILCCSLK SLPVFIFANQ AGLDMLETTL VALQDITLDK IFDESGRKAL CADFAKLMQQ  840
GFAYLPGGIC MSTMGRHVSY EQAVAWKVLA ADENTVHCLA FSFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012064816.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A067L6E50.0A0A067L6E5_JATCU; Uncharacterized protein
STRINGcassava4.1_001649m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]