PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05097.10
Common NameJCGZ_19224, LOC105641847, WRKY11
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 722aa    MW: 78522.1 Da    PI: 6.1116
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05097.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.3e-32322379260
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                    +DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers+ +++++ei+Y+g Hnh+k
  Jcr4S05097.10 322 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVKKKVERSH-EGHITEIIYKGAHNHPK 379
                    7****************************************.***************85 PP
2WRKY102.81.9e-32512570159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  Jcr4S05097.10 512 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 570
                    59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-28319380IPR003657WRKY domain
SuperFamilySSF1182902.22E-25320380IPR003657WRKY domain
SMARTSM007742.2E-36321379IPR003657WRKY domain
PROSITE profilePS5081123.307322380IPR003657WRKY domain
PfamPF031061.4E-24322378IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-37497572IPR003657WRKY domain
SuperFamilySSF1182901.96E-28504572IPR003657WRKY domain
PROSITE profilePS5081138.32507572IPR003657WRKY domain
SMARTSM007741.9E-37512571IPR003657WRKY domain
PfamPF031067.4E-25513570IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MAGIDDNVAI IGDWVPPSPS PRAFFSAILG DDISSRTIPE PLRDNRTEGF FLGSREQMME  60
GNADEKDATQ CGGAQFSELS PFSEQKSSSR GGLVERMAAR AGFNAPRLNT ESIRSAELSL  120
NPEIRSPYLT IPPGLSPTTL LDSPVLLSNS LAQPSPTTGK FSFIPNGNSK ISTLVSEPGD  180
KSKDNFFEDI NASSFAFKPI PDSGSSFFLS TTNKIIQAIL LQQSFPSIEV SVQSENPFPS  240
HGVEPTKVQS QNRNTLQVPL DFSRSTTEKD NGGNTIATDR RVFDIVGGSA EQSPPLDERQ  300
DEGDQRVSGD SMACGGIGTP SEDGYNWRKY GQKQVKGSEY PRSYYKCTHP NCLVKKKVER  360
SHEGHITEII YKGAHNHPKP PPNRRSGIGS SNPLMDVQLD VPEQTGLQSG IDNDPAWASA  420
QKGTAAGTPD WRHDNVEVTS SASVVDASST FSNEEEDDDR ATHGSVDYDG EGDESESKRR  480
KIENYPTDIG GATRAIREPR VVVQTTSEVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTN  540
AGCTVRKHVE RASHDLKSVI TTYEGKHNHD VPAARNSSHV NSGASSTGPA QTGTAIQNNV  600
HRPEPAQVHS SMTRFDRSAV YASFSLPGRQ QLGLTPGFSF GMNQPPGLAN LAMAGLGPGQ  660
PKMPVMPVHP YLAQQRPLNE MGFMLPKGEP KMEPMSEPSL NLSNNPSVYQ QIMSRLPLGP  720
QM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36316573778Probable WRKY transcription factor 4
2lex_A3e-36316573778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700120.0KC470012.1 Jatropha curcas WRKY transcription factor 11 (WRKY11) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081853.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_020538047.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_020538048.10.0probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLM9TIF00.0M9TIF0_JATCU; WRKY transcription factor 11
STRINGcassava4.1_002389m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-177WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  5. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  6. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]