PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04808.40 | ||||||||
Common Name | JCGZ_12590, LOC105639896 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 290aa MW: 32297.5 Da PI: 8.5623 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 144 | 198 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Jcr4S04808.40 144 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 198 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.2 | 3e-40 | 144 | 233 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Jcr4S04808.40 144 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 233 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.51E-19 | 132 | 201 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 140 | 200 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.3E-16 | 142 | 204 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.2E-16 | 144 | 198 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 144 | 198 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.64E-17 | 144 | 201 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 175 | 198 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.7E-26 | 200 | 243 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.6E-10 | 200 | 234 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGCFDDGCNT GLVLGLGFTS PKPEDKQINS NNIHKPKVIK PNCTLSNGFE PSLSLGLCGG 60 DAYRSNSKTL DVKKSFDHQE SSIVVGVVGA ELFSQASPHN SHSAVSSFSS GRVKRERDLS 120 SEEIEVERVS SRVSDEDEDG TNTRKKLRLT KEQSALLEES FKQHSTLNPK QKQALARQLN 180 LRPRQVEVWF QNRRARTKLK QTEVDCEFLK KCCETLTDEN RRLQKELQEL KALKLAQPFY 240 MHMPAATLTM CPSCERIGGV GSDSATKNNP FSMAPKPHFY NPFTNPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | TRKKLRL |
2 | 192 | 200 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079472.1 | 0.0 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 1e-100 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A067KJY1 | 0.0 | A0A067KJY1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_013954m | 1e-152 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 7e-83 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105639896 |
Publications ? help Back to Top | |||
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