PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04692.10

Common Name

JCGZ_12350, LOC105639668

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 293aa MW: 32769.5 Da PI: 6.3383

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04692.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.2	2.1e-41	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+ r+kC+++Cv+apyfp +qp+kfanvh +FGasnv kll++l++++reda++sl+yeAear+rdPvyG+vg+i+ lq++l++l+++l Jcr4S04692.10 7 PCAACKFRRQKCTQECVFAPYFPPDQPQKFANVHGVFGASNVAKLLNELSTTQREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKELQSDLYN 102 7********************************************************************************************999 PP DUF260 97 lkee 100 +k+e Jcr4S04692.10 103 AKKE 106 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.077	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-41	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MSSPNSPCAA CKFRRQKCTQ ECVFAPYFPP DQPQKFANVH GVFGASNVAK LLNELSTTQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ HRLKELQSDL YNAKKELAQY IGHQAMLPTL 120 QSPLYMPAQP SHLGNPSSLI QQGSFPIMGT PTGQLLVREN QQQHQQEVYE AQQLAAALAS 180 REQQQMFKVY ENQQKQQEIA RFNRGFNSSD SINTNNTTGF NQITVSAMSP SLALGTFDNT 240 TYHIQPEQMD QHHHLQAQLF LQSQQEEQQS QQTQQLQHQT SGSDEGGSVI PSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-49	5	119	9	124	LOB family transfactor Ramosa2.1
5ly0_B	7e-49	5	119	9	124	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079181.1	0.0	LOB domain-containing protein 36
Swissprot	Q9FKZ3	3e-80	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A067KJ76	0.0	A0A067KJ76_JATCU; Uncharacterized protein
STRING	cassava4.1_025228m	1e-135	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-78	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Entrez Gene	105639668

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]