PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04629.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25596.4 Da PI: 8.6279 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.5 | 1.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+i+fs tgkl+eyss Jcr4S04629.20 9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 52.3 | 2.5e-18 | 87 | 171 | 15 | 99 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + ++a+L ke+ + +++R++ GedL L+++eLqqLe+ Le++l+++ ++K e ++++i+ l kk ++l eenk+L++k++ Jcr4S04629.20 87 QLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNVEELQQLEKMLESGLTRVLETKGERIMNEISALEKKGEQLLEENKQLKQKMM 171 556778999******999*****************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.109 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-31 | 3 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.88E-33 | 12 | 75 | No hit | No description |
PRINTS | PR00404 | 4.6E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.243 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.0E-16 | 90 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD AEVALIVFSA TGKLFEYSSS 60 SMKDIIARYN LHSNNIDKLG RPSLELQLEN SNHARLSKEV AEKTHQLRQM RGEDLRGLNV 120 EELQQLEKML ESGLTRVLET KGERIMNEIS ALEKKGEQLL EENKQLKQKM MNLCKGKRVV 180 ESDIRLQEEG LSSESVTNVC SCTSGPPLED DSSDTSLKLG LPFWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 5e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 5e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 5e-20 | 1 | 69 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067997.1 | 1e-163 | MADS-box protein AGL24 | ||||
Refseq | XP_012067998.1 | 1e-163 | MADS-box protein AGL24 | ||||
Refseq | XP_012067999.1 | 1e-163 | MADS-box protein AGL24 | ||||
Refseq | XP_020533699.1 | 1e-163 | MADS-box protein AGL24 | ||||
Swissprot | Q9FVC1 | 6e-99 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A061FLR3 | 1e-133 | A0A061FLR3_THECC; K-box region and MADS-box transcription factor family protein | ||||
STRING | EOY15444 | 1e-134 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-101 | MIKC_MADS family protein |