PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04513.30

Common Name

GRAS05, JCGZ_02976, LOC105629954

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 684aa MW: 77765.4 Da PI: 6.5679

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04513.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	378.4	8.9e-116	310	680	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++cA+ v+ +d++ a +lL ++ +++sp gd +qRla yf++AL++rla+ ++ y+ l +++ts +s+ l+a++++++++P+ ++s++ Jcr4S04513.30 310 STLLTQCAQSVAISDQKTAYELLRQIGQHSSPFGDGNQRLAYYFARALETRLAGASTPKYSPLISNKTS---VSDILKAYQVYVKACPFKRMSNFF 402 579*************************************************888888777777776...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 aNq+I + +e+++ +HiiDf++ +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rL++++e+++vpf++n +a+++e++++ Jcr4S04513.30 403 ANQTISKVAEKATSLHIIDFGVLYGFQWPCLIQRLSERPGGPPMLRITGIELPQPGfrPAERVEETGRRLQRYCERFNVPFKYNC-IAQKWETIKY 497 ***************************************************9*************************.7***** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 e+L+++++E+++Vn+ ++l +l+d+ v +s+rd+vLkl+++++P+++++ + +n++ F++rf e+l +ys+lfd++e+++pre+e+r+ +Er Jcr4S04513.30 498 EDLNIDRDEMTIVNCLYRLRNLPDDIVVANSARDAVLKLIRQIRPDMFIHGVVNGTYNAPFFVTRFRETLFHYSSLFDMFEVTVPREDEQRMLYER 593 ******************************************************************************************** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++gr+i+nv+aceg+er+er et+++W+ r ++aGF++++l++++ k++++ +r + + + v+e+ ++++gWk+r + ++S W+ Jcr4S04513.30 594 GIFGRDIMNVIACEGTERVERPETYKQWQVRNMRAGFRQLALDQEILKKVRSTVRSEYHKDFVVDEDGRWMLQGWKGRVIHALSIWK 680 ****************************************************99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.146	283	660	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-113	310	680	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MDTLLQEFPN SMNRFKFDHF PDSFSSNRNF LNGYELNHNL SNPKSSFHSC SPEPPNDLIP 60 SSSSSSSSPS SSSSLSLEGN DPNNNAVLKY ISDMLMEEDL EGKTCMLQDS LALQAAEKSL 120 YDVLGQEYPH SLTQNLENPK KFCNSVNTSV EESNLILYQV DSDFYGIQSS FIDSPASTLI 180 GPDFQSEIHK GIIGNGDSLV LVPNSNSDKE ERDWSPNSSR GRKNHQREDS DHLEDERSNK 240 HSALSLAESE QSEMFDKVLL CPVGNTGSER CCLDEKSQNG VGKKGQGKGP NGRTARGRRH 300 GNKEEVVDLS TLLTQCAQSV AISDQKTAYE LLRQIGQHSS PFGDGNQRLA YYFARALETR 360 LAGASTPKYS PLISNKTSVS DILKAYQVYV KACPFKRMSN FFANQTISKV AEKATSLHII 420 DFGVLYGFQW PCLIQRLSER PGGPPMLRIT GIELPQPGFR PAERVEETGR RLQRYCERFN 480 VPFKYNCIAQ KWETIKYEDL NIDRDEMTIV NCLYRLRNLP DDIVVANSAR DAVLKLIRQI 540 RPDMFIHGVV NGTYNAPFFV TRFRETLFHY SSLFDMFEVT VPREDEQRML YERGIFGRDI 600 MNVIACEGTE RVERPETYKQ WQVRNMRAGF RQLALDQEIL KKVRSTVRSE YHKDFVVDED 660 GRWMLQGWKG RVIHALSIWK PVQT

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MDTLLQEFPN SMNRFKFDHF PDSFSSNRNF LNGYELNHNL SNPKSSFHSC SPEPPNDLIP  60
SSSSSSSSPS SSSSLSLEGN DPNNNAVLKY ISDMLMEEDL EGKTCMLQDS LALQAAEKSL  120
YDVLGQEYPH SLTQNLENPK KFCNSVNTSV EESNLILYQV DSDFYGIQSS FIDSPASTLI  180
GPDFQSEIHK GIIGNGDSLV LVPNSNSDKE ERDWSPNSSR GRKNHQREDS DHLEDERSNK  240
HSALSLAESE QSEMFDKVLL CPVGNTGSER CCLDEKSQNG VGKKGQGKGP NGRTARGRRH  300
GNKEEVVDLS TLLTQCAQSV AISDQKTAYE LLRQIGQHSS PFGDGNQRLA YYFARALETR  360
LAGASTPKYS PLISNKTSVS DILKAYQVYV KACPFKRMSN FFANQTISKV AEKATSLHII  420
DFGVLYGFQW PCLIQRLSER PGGPPMLRIT GIELPQPGFR PAERVEETGR RLQRYCERFN  480
VPFKYNCIAQ KWETIKYEDL NIDRDEMTIV NCLYRLRNLP DDIVVANSAR DAVLKLIRQI  540
RPDMFIHGVV NGTYNAPFFV TRFRETLFHY SSLFDMFEVT VPREDEQRML YERGIFGRDI  600
MNVIACEGTE RVERPETYKQ WQVRNMRAGF RQLALDQEIL KKVRSTVRSE YHKDFVVDED  660
GRWMLQGWKG RVIHALSIWK PVQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-49	298	681	8	380	Protein SCARECROW
5b3h_A	3e-49	298	681	7	379	Protein SCARECROW
5b3h_D	3e-49	298	681	7	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405256	0.0	KM405256.1 Jatropha curcas GRAS05 protein (GRAS05) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067006.1	0.0	scarecrow-like protein 11
TrEMBL	A0A067L1C5	0.0	A0A067L1C5_JATCU; GRAS05 protein
STRING	cassava4.1_002718m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	105629954

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]