PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04462.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 29454.1 Da PI: 8.6059 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 131 | 180 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f taeeAa+a+++a+ ++g Jcr4S04462.60 131 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEEAARAYDKAAIDFRG 180 59*******.**********82....48**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.47E-35 | 130 | 188 | No hit | No description |
PROSITE profile | PS51032 | 25.146 | 131 | 188 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-33 | 131 | 188 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-14 | 131 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 131 | 189 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-38 | 131 | 194 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-12 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-12 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MHKSSKRLKH TGPPPTEYLP PAMLLPRLTQ DQELFIMVSA LKNVVSGTTS STSVATDLFH 60 QFAAAASSSS PATAVASTAV TTTTDSLYNP IPPPSDLDTC NICKIKGCLG CNFFPPNQEE 120 KKGTRKRVKK NYRGVRQRPW GKWAAEIRDP RRATRVWLGT FNTAEEAARA YDKAAIDFRG 180 PRAKLNFPFP DNTASNLEGQ STPQEQQQKE NGKRKELEVE MQVGKEYEFW EKIGEDEIQQ 240 WMNMMDFNGD SSDSTGTAAT TTIAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-23 | 130 | 189 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-23 | 130 | 194 | 4 | 69 | ATERF1 |
3gcc_A | 5e-23 | 130 | 194 | 4 | 69 | ATERF1 |
5wx9_A | 8e-23 | 132 | 197 | 15 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012066876.1 | 0.0 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A067LCS4 | 0.0 | A0A067LCS4_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_014137m | 1e-121 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2962 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 4e-33 | redox responsive transcription factor 1 |