PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04113.10
Common NameJCGZ_16684, WRKY07
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 560aa    MW: 62007.5 Da    PI: 6.9563
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04113.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32228285260
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                    +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve+s  d++++ei+Y+g+Hnh+k
  Jcr4S04113.10 228 EDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVEKSL-DGQITEIVYKGSHNHPK 285
                    7****************************************.***************85 PP
2WRKY105.23.4e-33400458159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+H+h+
  Jcr4S04113.10 400 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHDHD 458
                    59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-28213286IPR003657WRKY domain
PROSITE profilePS5081123.215222286IPR003657WRKY domain
SuperFamilySSF1182907.72E-25222286IPR003657WRKY domain
SMARTSM007741.5E-35227285IPR003657WRKY domain
PfamPF031065.8E-25228284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-37385460IPR003657WRKY domain
SuperFamilySSF1182902.88E-29392460IPR003657WRKY domain
PROSITE profilePS5081137.688395460IPR003657WRKY domain
SMARTSM007741.0E-38400459IPR003657WRKY domain
PfamPF031061.9E-25401457IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGSSSGSLDT SINSHPSSFS FSSAFMTTSF SDLLASGDDQ PNTTQNVRRG LSDRIAERTG  60
SGIPKFKSIP PPSLPLSPPP VSPSSYFAIP PGLSPTELLD SPVLLNSSNI FPSPTTGTFP  120
TQFANWKTNS VDNQQNVKQE DHNYSDFSFQ PPTRPNTTSL NTTILTAQKQ GWGFQESEKQ  180
SFSNEIAAIQ TKSQRSNGFQ SDYGGQQQQQ QQQQQQQYQS IREQKRSEDG YNWRKYGQKQ  240
VKGSENPRSY YKCTYPNCPT KKKVEKSLDG QITEIVYKGS HNHPKPQSTR RSSSSSSSAT  300
NLAIQAPNHV TNDLQDQSFV THGSGQMDSA ATTDNSSISV GDDDFDSQKS KSRSEEFDED  360
EPEAKRWKTE TENEGISAPG SRTVREPRVV VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP  420
RSYYKCTHPG CPVRKHVERA SHDLRAVITT YEGKHDHDVP AARGSGGSNR PLPESNNGNN  480
NAAMAIRPSA VNHRSNNLLG VTSEGEAPYS LEMFQNQSSY GFSSFGNQMG SYLNQTSTDN  540
VFSRTKEEPR DEMFLESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36219461878Probable WRKY transcription factor 4
2lex_A1e-36219461878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700090.0KC470009.1 Jatropha curcas WRKY transcription factor 07 (WRKY07) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080808.10.0WRKY transcription factor WRKY24 isoform X1
SwissprotQ6B6R41e-134WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLM9TGB80.0M9TGB8_JATCU; WRKY transcription factor 07
STRINGcassava4.1_004465m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-123WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]