PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04112.10
Common NameGRAS44, JCGZ_12067
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 460aa    MW: 50832.6 Da    PI: 6.7646
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04112.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.59.4e-96684531374
           GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar.sv.......selykalppsetseknsseelaalklfs 85 
                    lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+Rlaayft AL++ l +  +       ++     p  + +++++ ++laa++l++
  Jcr4S04112.10  68 LVHLLMAAAEALTGVNKSrdLARVILVRLKELVSPNDgTNMERLAAYFTDALQNLLEGaAGsggghsnKHFITNGPYHHHHRDDQNDVLAAFQLLQ 163
                    68***********96665559***********8887669*****************9753311111112333334555566666************ PP

           GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAe.elgvpf 176
                    ++sP++kf+h+taNqaIleav +++r+Hi+D+di++G+QW++L+q+L sR++gpp  +lRiT++++  sg  s  +++etg+rL  f + +    f
  Jcr4S04112.10 164 DMSPYVKFGHFTANQAILEAVTQDRRIHIVDYDIMEGIQWASLMQSLVSRKDGPPtpHLRITALSRGGSGrkSIGTIQETGRRLVAFRRlNWAAVF 259
                    ***************************************************776556*********888888999************873456679 PP

           GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl 271
                     f+ +v ++ e++++++L++ +gEal+ n++l+l ++  +  ++     ++L   k+l+P++v++ve+e+   +++ F++rf+++l++ysa++dsl
  Jcr4S04112.10 260 FFTSVVLDSDETFRPSALKLVRGEALIMNCMLHLPHFIYRAPDSVA---SFLTGAKTLNPRLVTLVEEEVGPiGDGGFVNRFMDSLHHYSAVYDSL 352
                    99999*******************************9966655555...9*******************9988*********************** PP

           GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrp 366
                    ea++p +s++r+ vEr++lg++i   +a   + r e+    ++  ++l+++GFk+ ++s  + +qaklll  ++ dgyrvee+  + lvlgWk+r+
  Jcr4S04112.10 353 EAGFPMQSRARALVERVFLGPRIAGSLARIYRTRGEKDA--GSYGDWLGAVGFKAGNISFANHCQAKLLLGLFN-DGYRVEESgCNRLVLGWKSRR 445
                    *******************************99877665..889999***************************.******99578999******* PP

           GRAS 367 LvsvSaWr 374
                    ++s+S W+
  Jcr4S04112.10 446 ILSASIWT 453
                    *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.70642433IPR005202Transcription factor GRAS
PfamPF035143.3E-9368453IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MTMAMAIDGT FELDFSGYSP STTTTTTSTD HAGNWNDWSP VVDWKALSGP HDDFQDLIES  60
MMEDGLRLVH LLMAAAEALT GVNKSRDLAR VILVRLKELV SPNDGTNMER LAAYFTDALQ  120
NLLEGAAGSG GGHSNKHFIT NGPYHHHHRD DQNDVLAAFQ LLQDMSPYVK FGHFTANQAI  180
LEAVTQDRRI HIVDYDIMEG IQWASLMQSL VSRKDGPPTP HLRITALSRG GSGRKSIGTI  240
QETGRRLVAF RRLNWAAVFF FTSVVLDSDE TFRPSALKLV RGEALIMNCM LHLPHFIYRA  300
PDSVASFLTG AKTLNPRLVT LVEEEVGPIG DGGFVNRFMD SLHHYSAVYD SLEAGFPMQS  360
RARALVERVF LGPRIAGSLA RIYRTRGEKD AGSYGDWLGA VGFKAGNISF ANHCQAKLLL  420
GLFNDGYRVE ESGCNRLVLG WKSRRILSAS IWTSPSESDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-49494561381Protein SCARECROW
5b3h_D2e-49494561381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052660.0KM405266.1 Jatropha curcas GRAS44 protein (GRAS44) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078195.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A067KKJ10.0A0A067KKJ1_JATCU; GRAS44 protein
STRINGPOPTR_0002s08660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-154GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]