PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04097.30

Common Name

JCGZ_17953, LOC105644804

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NF-YC

Protein Properties

Length: 97aa MW: 11116.9 Da PI: 10.319

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04097.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	54	3.6e-17	5	94	11	99
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivprd 99 e++++ + ++P r+kki+k d+d++++++ea l+s + elf+ ++ +s a e+kr+t+k i +av+r + + dfl+d p Jcr4S04097.30 5 ENVEKTIRPQFPTGRVKKIVKLDKDINKVTSEAFFLISSSVELFLRFIAEKSTEVAVEKKRKTVKLDHIRTAVKRHQpTSDFLLDSLPFA 94 5555666789*************************************************************9976489***99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.29E-19	6	94	IPR009072	Histone-fold
Pfam	PF00808	5.3E-19	14	77	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.0E-20	15	92	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MAEEENVEKT IRPQFPTGRV KKIVKLDKDI NKVTSEAFFL ISSSVELFLR FIAEKSTEVA 60 VEKKRKTVKL DHIRTAVKRH QPTSDFLLDS LPFANSV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012085670.1	5e-59	nuclear transcription factor Y subunit gamma
TrEMBL	A0A067K3H3	1e-57	A0A067K3H3_JATCU; Uncharacterized protein
STRING	XP_002514923.1	4e-48	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11105	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	2e-42	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Entrez Gene	105644804

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]