PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03984.30

Common Name

JCGZ_18690, LOC105641744

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 203aa MW: 22906.6 Da PI: 10.3714

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03984.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.8e-11	43	89	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+e+Er+RR riN+ +++Lr+ lP++ K +Ka++L ++++ +k+L+ Jcr4S03984.30 43 KHKEAERKRRVRINNQYAKLRSFLPNL-----IKRNKASVLAETIQRVKELE 89 6***********************9.....69**********999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.675	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.76E-8	42	93	No hit	No description
SuperFamily	SSF47459	3.14E-13	43	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-8	43	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-12	43	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-7	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
YHNPGTCSKK MNLHSSESFM DALNYRSSLS MSKGEAKVVS ALKHKEAERK RRVRINNQYA 60 KLRSFLPNLI KRNKASVLAE TIQRVKELEN TVSELKEIYG FGLFPGGKET LSVEYSKRQG 120 QRLVKVMFSC DDKEKLMSDI ERAVMSGKGK VVRVEIVAVC GWTKSVLWVQ GINGNRQLDV 180 LRTALDAIID PIMPNSKPAT CRD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	53	KHKEAERKRRVR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012081730.1	1e-141	transcription factor bHLH131
TrEMBL	A0A067KBZ3	1e-139	A0A067KBZ3_JATCU; Uncharacterized protein
STRING	cassava4.1_030122m	2e-92	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12611	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	7e-33	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105641744

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]