PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03790.30

Common Name

JCGZ_11804, LOC105640790

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bZIP

Protein Properties

Length: 199aa MW: 22939.6 Da PI: 6.4198

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03790.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45	2.4e-14	81	138	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +++rr+++NRe+ArrsR RK++ ++eL v L +eN+ L ++l++ ++ +++ +e Jcr4S03790.30 81 RKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLMDKLNHVSECHDRVLQE 138 79********************************************998877666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.5E-16	77	141	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.726	79	130	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.41E-12	81	134	No hit	No description
Pfam	PF00170	2.9E-12	81	139	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.9E-13	81	154	No hit	No description
CDD	cd14702	2.31E-20	82	133	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MIPGEITGIH YFSPENPIPF SGFLHQNNIP SFHFNTLLTN FHQNSPFPQP VQDFTTQTSS 60 LSNNSTSDEA EETQLSIIDE RKQRRMISNR ESARRSRMRK QKHLDELWSQ VVRLRTENHN 120 LMDKLNHVSE CHDRVLQENA RLKEEASDLR QMLTEMQIGS PFTATALRDL EEVVPCNTAH 180 LRAEASNQSI SSTNVDLLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	100	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012080573.1	1e-146	basic leucine zipper 43
Swissprot	Q9FMC2	4e-40	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A067K8T1	1e-145	A0A067K8T1_JATCU; Uncharacterized protein
STRING	cassava4.1_022183m	1e-106	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	3e-45	basic leucine-zipper 42

Link Out ? help Back to Top
Entrez Gene	105640790

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]