PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03691.50 | ||||||||
Common Name | JCGZ_14207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 238aa MW: 27294.2 Da PI: 4.5016 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 35 | 89 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le++Fe+++ + +++ +LAk+lgL+ rqV +WFqN+Ra++k Jcr4S03691.50 35 KNKRRFSDEQIKSLETMFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 89 67789*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.3 | 2.4e-39 | 36 | 127 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+k+LE++Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy++L+++y++l+++ e+L+ke+++L+ +l++ Jcr4S03691.50 36 NKRRFSDEQIKSLETMFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSVLRANYNNLASRFETLKKEKQALAIQLQK 127 79*************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.14E-19 | 19 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.415 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-17 | 33 | 95 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.0E-17 | 35 | 89 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-19 | 36 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.77E-14 | 40 | 92 | No hit | No description |
PRINTS | PR00031 | 8.6E-6 | 62 | 71 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.6E-6 | 71 | 87 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-16 | 91 | 131 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MFDEEEVYSP CASAEDLFTA MDTALSTTSR RKKTKNKRRF SDEQIKSLET MFESESRLEP 60 RKKLQLAKEL GLQPRQVAIW FQNKRARWKS KQLERDYSVL RANYNNLASR FETLKKEKQA 120 LAIQLQKLNE LIEKPREEGE CCGEQETGVN SSEGESEAKG VISSFERSRN GLGVASDEDS 180 SIKVEYFGLE EEPDNNLISM VEAADGSLTS QEDWRSLESD GLFDQSNSGS DQWWDFWA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00013 | PBM | Transfer from AT3G61890 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF022009 | 0.0 | KF022009.1 Jatropha curcas homeobox 12 (HB12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012083130.1 | 1e-173 | homeobox-leucine zipper protein ATHB-12 | ||||
Swissprot | Q9M276 | 8e-69 | ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | A0A067JWT5 | 1e-172 | A0A067JWT5_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_014981m | 1e-108 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 2e-63 | homeobox 12 |
Link Out ? help Back to Top | |
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Entrez Gene | 105642795 |
Publications ? help Back to Top | |||
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