PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03684.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 456aa MW: 52836.4 Da PI: 7.5722

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03684.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.4	1.7e-27	86	167	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++ Jcr4S03684.10 86 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 167 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.571	78	142	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.6E-4	78	144	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-5	82	144	IPR001005	SANT/Myb domain
CDD	cd12203	1.01E-29	84	149	No hit	No description
Pfam	PF13837	8.2E-22	85	169	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MYLSDKPRPI DFYKEEVAPA NRDNMIIEVV STNGDLPPHQ HHLHNPHNPP PQQQQQQQPQ 60 QQMILGDSSG EDNHEVKAPK KRAETWVQDE TRSLIALRRE MDGLFNTSKS NKHLWEQISA 120 KMREKGFDRS PTMCTDKWRN LLKEFKKAKH QDRGSGSAKM SYYKEIDEIL RERCKNAQYK 180 SPTPTSKVDS YMQFADKVEW NGTVVYNLNR AXSWPIQLYE FIMPCNAEFF IKTARGLKLR 240 NCCSIVCYGQ LVPQKWHQLC AIYSFLTYSI SSGRPSLNLE RRLDHDGHPL AITAPDAVAA 300 SGVPPWNWRE TPGNGPENQS FGGRVITVKY LDYTRRVGVD GTTDAIKEAI KSAFRLRTKR 360 AFWLEDEDQI IRSLDRDMPV GNYTLHLDEG LAVKVCLYDE SDHMPVHTEE KVFYTEDDYR 420 DFLTRRGWTC LREFDGYRNV DNMDDLRPGA LYRGVT

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MYLSDKPRPI DFYKEEVAPA NRDNMIIEVV STNGDLPPHQ HHLHNPHNPP PQQQQQQQPQ  60
QQMILGDSSG EDNHEVKAPK KRAETWVQDE TRSLIALRRE MDGLFNTSKS NKHLWEQISA  120
KMREKGFDRS PTMCTDKWRN LLKEFKKAKH QDRGSGSAKM SYYKEIDEIL RERCKNAQYK  180
SPTPTSKVDS YMQFADKVEW NGTVVYNLNR AXSWPIQLYE FIMPCNAEFF IKTARGLKLR  240
NCCSIVCYGQ LVPQKWHQLC AIYSFLTYSI SSGRPSLNLE RRLDHDGHPL AITAPDAVAA  300
SGVPPWNWRE TPGNGPENQS FGGRVITVKY LDYTRRVGVD GTTDAIKEAI KSAFRLRTKR  360
AFWLEDEDQI IRSLDRDMPV GNYTLHLDEG LAVKVCLYDE SDHMPVHTEE KVFYTEDDYR  420
DFLTRRGWTC LREFDGYRNV DNMDDLRPGA LYRGVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-50	80	165	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012085608.1	0.0	trihelix transcription factor GT-1 isoform X1
Swissprot	Q9FX53	1e-153	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A067JSB4	0.0	A0A067JSB4_JATCU; Uncharacterized protein
STRING	XP_009359289.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-150	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]