PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03676.20

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 374aa MW: 40530.7 Da PI: 7.0688

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03676.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.9	3.9e-37	14	68	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC stntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Jcr4S03676.20 14 SCPRCGSTNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68 7***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-30	1	67	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.751	13	67	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-31	14	67	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	15	51	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MDRGWKPNVE ISPSCPRCGS TNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKNRRGKS LRLSSTHDVH VPHSRSLLGN CGGNNSNNKG VSPPMESRNN NSMISEGSQI 120 DLALVYANFL NPQSVDHSKI TTTAAPTTIT AAAAATTTGF EMQELGSDFD FSGISSANLE 180 LTSLAMEEGS MNENDHQLMY YCGVDSSTNK QQLASNFKIQ ESTSGLPPLP GEEILWDDDN 240 TGNLQGLVPH TVPVVAESIT PDLPSYILGP NAIQHAILIS TGPVVAESIT PGLPSHILGP 300 NAIQHAILIS NSLTSSIGSP WYGIMDRDAG LTPLHAVCVE SKRHMPLGLA LPYQIFLSFT 360 VQFSKIVFAY FQSR

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MDRGWKPNVE ISPSCPRCGS TNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG  60
GCRKNRRGKS LRLSSTHDVH VPHSRSLLGN CGGNNSNNKG VSPPMESRNN NSMISEGSQI  120
DLALVYANFL NPQSVDHSKI TTTAAPTTIT AAAAATTTGF EMQELGSDFD FSGISSANLE  180
LTSLAMEEGS MNENDHQLMY YCGVDSSTNK QQLASNFKIQ ESTSGLPPLP GEEILWDDDN  240
TGNLQGLVPH TVPVVAESIT PDLPSYILGP NAIQHAILIS TGPVVAESIT PGLPSHILGP  300
NAIQHAILIS NSLTSSIGSP WYGIMDRDAG LTPLHAVCVE SKRHMPLGLA LPYQIFLSFT  360
VQFSKIVFAY FQSR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU664870	1e-122	EU664870.1 Jatropha curcas microsatellite JATR788 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074418.1	0.0	dof zinc finger protein DOF3.5
TrEMBL	B9SDJ2	5e-84	B9SDJ2_RICCO; Zinc finger protein, putative
STRING	XP_002524061.1	8e-85	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-42	Dof family protein